Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AB020701 Gold_bad 1 4113 2302 1812 1 10 96796423 96794613
AB020701 Gold_excellent 1 4113 1 2303 3 10 96781590 96779290
AB033067 Gold_bad 1 5741 3435 2307 2 5 70871828 70874134
AB033067 Gold_excellent 8 5741 8 3434 11 5 70768005 70891252
AB037810 Gold_bad 1 5801 1 72 1 1 229734758 229734686
AB037810 Gold_bad 1 5801 66 64 0 1 229734667 229734731
AB037810 Gold_excellent 21 5801 128 5674 2 1 229734700 229617983
AB046816 Gold_bad 1 4696 1 321 1 14 43634374 43634694
AB046816 Gold_bad 1 4696 321 48 0 14 43634708 43634661
AB046816 Gold_excellent 10 4696 365 4332 2 14 43634687 43660125
AB075821 Gold_bad 5 6029 1 1955 4 22 23563981 23575584
AB075821 Gold_partial 20 6029 2246 3784 0 22 23570896 23645877