Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AB020701 | Gold_bad | 1 | 4113 | 2302 | 1812 | 1 | 10 | 96796423 | 96794613 |
AB020701 | Gold_excellent | 1 | 4113 | 1 | 2303 | 3 | 10 | 96781590 | 96779290 |
AB033067 | Gold_bad | 1 | 5741 | 3435 | 2307 | 2 | 5 | 70871828 | 70874134 |
AB033067 | Gold_excellent | 8 | 5741 | 8 | 3434 | 11 | 5 | 70768005 | 70891252 |
AB037810 | Gold_bad | 1 | 5801 | 1 | 72 | 1 | 1 | 229734758 | 229734686 |
AB037810 | Gold_bad | 1 | 5801 | 66 | 64 | 0 | 1 | 229734667 | 229734731 |
AB037810 | Gold_excellent | 21 | 5801 | 128 | 5674 | 2 | 1 | 229734700 | 229617983 |
AB046816 | Gold_bad | 1 | 4696 | 1 | 321 | 1 | 14 | 43634374 | 43634694 |
AB046816 | Gold_bad | 1 | 4696 | 321 | 48 | 0 | 14 | 43634708 | 43634661 |
AB046816 | Gold_excellent | 10 | 4696 | 365 | 4332 | 2 | 14 | 43634687 | 43660125 |
AB075821 | Gold_bad | 5 | 6029 | 1 | 1955 | 4 | 22 | 23563981 | 23575584 |
AB075821 | Gold_partial | 20 | 6029 | 2246 | 3784 | 0 | 22 | 23570896 | 23645877 |