| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| BC001980 | Gold_bad | 1 | 1243 | 1 | 39 | 0 | 6 | 160010662 | 160010701 |
| BC001980 | Gold_excellent | 1 | 1243 | 36 | 1208 | 1 | 6 | 160010646 | 160009436 |
| BC005385 | Gold_bad | 1 | 885 | 673 | 213 | 1 | 16 | 75038156 | 75038368 |
| BC005385 | Gold_excellent | 6 | 885 | 1 | 672 | 0 | 16 | 75020634 | 75018224 |
| BC007784 | Gold_bad | 1 | 1052 | 1 | 43 | 0 | 5 | 37333069 | 37333112 |
| BC007784 | Gold_excellent | 1 | 1052 | 40 | 1013 | 0 | 5 | 37333051 | 37332038 |
| BC008645 | Gold_bad | 1 | 820 | 20 | 84 | 0 | 7 | 25966651 | 25966735 |
| BC008645 | Gold_partial | 1 | 820 | 100 | 721 | 0 | 7 | 25966677 | 25965957 |
| BC009034 | Gold_bad | 1 | 1059 | 43 | 40 | 0 | 19 | 19479754 | 19479715 |
| BC009034 | Gold_partial | 1 | 1059 | 74 | 998 | 6 | 19 | 19479737 | 19480734 |
| BC009820 | Gold_bad | 1 | 1518 | 1 | 43 | 0 | 11 | 122294322 | 122294280 |
| BC009820 | Gold_excellent | 3 | 1518 | 40 | 1479 | 0 | 11 | 122294309 | 122314246 |
| BC011489 | Gold_bad | 1 | 1381 | 1 | 183 | 0 | 14 | 53248888 | 53248706 |
| BC011489 | Gold_excellent | 1 | 1381 | 181 | 1201 | 5 | 14 | 53248863 | 53250068 |
| BC014882 | Gold_bad | 1 | 1440 | 1 | 67 | 0 | 6 | 90378640 | 90378707 |
| BC014882 | Gold_excellent | 10 | 1440 | 58 | 1383 | 3 | 6 | 90378677 | 90364213 |
| BC015215 | Gold_bad | 1 | 1132 | 1 | 163 | 0 | 15 | 66200142 | 66200305 |
| BC015215 | Gold_excellent | 1 | 1132 | 161 | 972 | 0 | 15 | 66200202 | 66199229 |
| BC015417 | Gold_bad | 1 | 1682 | 1 | 39 | 0 | 9 | 68215765 | 68215727 |
| BC015417 | Gold_excellent | 6 | 1682 | 34 | 1649 | 1 | 9 | 68215803 | 68299007 |
| BC015979 | Gold_bad | 1 | 709 | 521 | 163 | 2 | 19 | 51026284 | 51026446 |
| BC015979 | Gold_partial | 1 | 709 | 1 | 513 | 7 | 19 | 51026552 | 51026033 |
| BC018305 | Gold_bad | 1 | 2481 | 1 | 49 | 0 | 12 | 30681252 | 30681204 |
| BC018305 | Gold_bad | 1 | 2481 | 42 | 78 | 1 | 12 | 30681247 | 30681325 |
| BC018305 | Gold_excellent | 4 | 2481 | 116 | 2366 | 2 | 12 | 30681258 | 30673189 |
| BC018563 | Gold_bad | 1 | 2569 | 2322 | 248 | 0 | 7 | 99888938 | 99889186 |
| BC018563 | Gold_excellent | 8 | 2569 | 1 | 2327 | 7 | 7 | 99892604 | 99889502 |
| BC018959 | Gold_bad | 1 | 2010 | 8 | 64 | 2 | 1 | 204282038 | 204282103 |
| BC018959 | Gold_excellent | 2 | 2010 | 67 | 1944 | 1 | 1 | 204282063 | 204278712 |
| BC019618 | Gold_bad | 1 | 1362 | 1129 | 234 | 2 | 12 | 2919765 | 2919532 |
| BC019618 | Gold_excellent | 1 | 1362 | 1 | 1130 | 0 | 12 | 2919157 | 2920286 |
| BC019853 | Gold_bad | 1 | 892 | 1 | 36 | 0 | 3 | 10343600 | 10343636 |
| BC019853 | Gold_excellent | 1 | 892 | 31 | 862 | 1 | 3 | 10343611 | 10342751 |
| BC021886 | Gold_bad | 1 | 465 | 1 | 65 | 1 | 17 | 41528140 | 41528076 |
| BC021886 | Gold_excellent | 4 | 465 | 66 | 410 | 0 | 17 | 41523966 | 41528141 |
| BC026892 | Gold_bad | 1 | 1310 | 1 | 45 | 0 | 5 | 156802239 | 156802195 |
| BC026892 | Gold_excellent | 1 | 1310 | 41 | 1270 | 0 | 5 | 156802221 | 156803491 |
| BC030521 | Gold_bad | 1 | 2117 | 1 | 61 | 0 | 5 | 71612344 | 71612404 |
| BC030521 | Gold_excellent | 5 | 2117 | 59 | 2059 | 3 | 5 | 71612365 | 71599426 |
| BC032596 | Gold_bad | 3 | 1166 | 658 | 517 | 0 | 9 | 41491605 | 41495634 |
| BC032596 | Gold_excellent | 2 | 1166 | 12 | 647 | 1 | 9 | 41430296 | 41428373 |
| BC033217 | Gold_bad | 1 | 2163 | 1562 | 91 | 0 | 9 | 131870870 | 131870780 |
| BC033217 | Gold_bad | 2 | 2163 | 17 | 100 | 0 | 9 | 131919942 | 131924243 |
| BC033217 | Gold_partial | 13 | 2163 | 109 | 1908 | 5 | 9 | 131919952 | 131870419 |
| BC034435 | Gold_bad | 2 | 1779 | 1 | 440 | 1 | 8 | 144478960 | 144480603 |
| BC034435 | Gold_excellent | 7 | 1779 | 441 | 1339 | 0 | 8 | 144655965 | 144624965 |
| BC036887 | Gold_bad | 1 | 2011 | 58 | 115 | 0 | 2 | 242744113 | 242744228 |
| BC036887 | Gold_partial | 2 | 2011 | 162 | 1858 | 5 | 2 | 242744032 | 242742113 |
| BC037263 | Gold_bad | 1 | 1015 | 1 | 41 | 1 | 18 | 9567143 | 9567183 |
| BC037263 | Gold_excellent | 10 | 1015 | 34 | 982 | 0 | 18 | 9604512 | 9567104 |
| BC038592 | Gold_bad | 1 | 1369 | 15 | 37 | 0 | 9 | 15178046 | 15178083 |
| BC038592 | Gold_excellent | 7 | 1369 | 48 | 1322 | 0 | 9 | 15178063 | 15161565 |
| BC041045 | Gold_bad | 1 | 1467 | 1 | 44 | 0 | 1 | 175303087 | 175303131 |
| BC041045 | Gold_bad | 1 | 1467 | 41 | 309 | 1 | 1 | 175302989 | 175302681 |
| BC041045 | Gold_excellent | 8 | 1467 | 347 | 1121 | 0 | 1 | 175303033 | 175651409 |
| BC041323 | Gold_bad | 1 | 1139 | 1 | 56 | 0 | 16 | 66627572 | 66627628 |
| BC041323 | Gold_excellent | 12 | 1139 | 50 | 1090 | 1 | 16 | 66627604 | 66613018 |
| BC043393 | Gold_bad | 1 | 3903 | 17 | 45 | 0 | 3 | 184800956 | 184800912 |
| BC043393 | Gold_excellent | 17 | 3903 | 58 | 3846 | 0 | 3 | 184800945 | 184850773 |
| BC047350 | Gold_bad | 3 | 2389 | 22 | 247 | 1 | 2 | 198556399 | 198560622 |
| BC047350 | Gold_excellent | 11 | 2389 | 262 | 2128 | 3 | 2 | 198566061 | 198553853 |
| BC047525 | Gold_bad | 1 | 1463 | 1278 | 186 | 4 | 18 | 54293241 | 54293054 |
| BC047525 | Gold_excellent | 1 | 1463 | 1 | 1294 | 0 | 18 | 54292392 | 54293686 |
| BC056910 | Gold_bad | 1 | 2548 | 35 | 64 | 1 | 1 | 198105478 | 198105415 |
| BC056910 | Gold_excellent | 3 | 2548 | 95 | 2463 | 1 | 1 | 198105435 | 198110800 |
| BC057384 | Gold_bad | 1 | 1185 | 1072 | 75 | 1 | 8 | 25252145 | 25252070 |
| BC057384 | Gold_partial | 11 | 1185 | 1 | 1077 | 2 | 8 | 25252051 | 25275108 |
| BC058910 | Gold_bad | 1 | 2819 | 2707 | 97 | 1 | 9 | 129649562 | 129649465 |
| BC058910 | Gold_excellent | 1 | 2819 | 1 | 2713 | 3 | 9 | 129648911 | 129651623 |
| BC060510 | Gold_bad | 2 | 2904 | 5 | 717 | 12 | X | 47801027 | 47799446 |
| BC060510 | Gold_good | 1 | 2904 | 598 | 2307 | 9 | X | 47829771 | 47832097 |
| BC063536 | Gold_bad | 1 | 1513 | 1 | 63 | 0 | X | 38945614 | 38945677 |
| BC063536 | Gold_excellent | 4 | 1513 | 68 | 1435 | 3 | X | 38945576 | 38941412 |
| BC065824 | Gold_bad | 1 | 831 | 17 | 159 | 3 | 15 | 63101166 | 63101325 |
| BC065824 | Gold_excellent | 3 | 831 | 161 | 671 | 0 | 15 | 63107754 | 63100913 |