Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
BC000399 Gold_excellent 21 2228 1 2228 0 17 7323792 7329149
BC000443 Gold_excellent 2 1173 1 1173 4 11 44919365 44918212
BC000488 Gold_excellent 4 2798 1 2798 1 11 66159477 66170174
BC000586 Gold_good 13 2409 1 2409 17 2 239256499 239294803
BC000751 Gold_excellent 7 1239 1 1238 2 17 7411534 7416339
BC001236 Gold_excellent 8 1430 1 1430 0 19 60482877 60465536
BC001543 Gold_excellent 3 2035 1 2019 3 12 52653196 52656470
BC001560 Gold_good 5 2814 1 2814 36 12 27568358 27681519
BC001832 Gold_excellent 7 1239 1 1238 2 17 7411534 7416339
BC001978 Gold_excellent 12 2756 1 2756 4 2 47208334 47276989
BC002918 Gold_excellent 3 2092 10 2083 4 7 2187561 2218552
BC003010 Gold_excellent 2 1173 1 1173 4 11 44919365 44918212
BC004330 Gold_excellent 11 3387 1 3387 6 15 45771341 45781117
BC004405 Gold_excellent 2 2129 1 2129 1 15 38023662 38021568
BC004980 Gold_good 10 1571 1 1571 17 22 17540791 17537648
BC004988 Gold_excellent 2 3810 1 3810 13 19 4742770 4746567
BC005010 Gold_excellent 3 1885 1 1885 0 2 43428069 43425666
BC005134 Gold_partial 6 804 12 793 2 3 40459972 40464451
BC006267 Gold_good 6 1773 1 1773 13 11 61899293 61936242
BC006365 Gold_excellent 14 2485 1 2485 5 1 224033600 224058428
BC006503 Gold_excellent 12 1464 7 1458 0 17 74118928 74157927
BC007095 Gold_good 4 1122 1 1122 5 2 42562891 42552182
BC007351 Gold_excellent 4 1698 1 1698 0 6 82458008 82454956
BC007560 Gold_excellent 9 3640 1 3640 14 17 37401283 37452985
BC007891 Gold_good 13 2478 1 2478 17 2 239256430 239294803
BC008061 Gold_good 10 1573 1 1573 17 22 17540793 17537648
BC008094 Gold_good 5 859 1 859 4 10 85669419 85675243
BC008583 Gold_excellent 7 1541 1 1541 4 18 65415636 65658346
BC009294 Gold_partial 7 732 9 724 0 3 40459411 40464359
BC009381 Gold_good 6 2314 1 2314 16 20 63011168 62997414
BC009492 Gold_excellent 2 1567 1 1567 3 12 127652394 127650848
BC010628 Gold_bad 1 2741 1 72 2 19 60315768 60315697
BC010628 Gold_excellent 22 2741 60 2682 5 19 60320499 60294095
BC010879 Gold_excellent 11 1420 1 1420 0 17 74118915 74157940
BC011369 Gold_excellent 6 2184 1 2184 3 16 88667693 88673232
BC011810 Gold_partial 3 3228 28 3181 7 19 63064153 63067925
BC011978 Gold_partial 6 1066 25 1054 7 2 48707239 48717058
BC012002 Gold_excellent 6 1721 1 1721 1 2 44370584 44433145
BC012130 Gold_bad 1 4082 1388 101 1 17 79872895 79872795
BC012130 Gold_bad 2 4082 1484 351 1 17 79872220 79871653
BC012130 Gold_excellent 26 4082 1 3592 6 17 79896870 79863517
BC012460 Gold_good 9 3507 1 3507 17 17 37401359 37452977
BC013229 Gold_good 3 2775 1 2775 13 3 184326181 184337204
BC013275 Gold_excellent 2 2177 10 2177 7 19 14121720 14119557
BC013313 Gold_excellent 3 2163 1 2163 2 1 144739762 144736398
BC013593 Gold_good 14 2530 1 2530 19 6 44320376 44314284
BC014049 Gold_excellent 14 1568 1 1568 2 20 25366454 25270380
BC014077 Gold_excellent 21 2650 1 2650 10 19 40183086 40209213
BC014200 Gold_excellent 2 2217 13 2205 2 3 129863467 129865653
BC014346 Gold_good 2 956 3 954 10 13 38909324 38908385
BC014513 Gold_excellent 8 1621 1 1621 1 16 2016898 2028397
BC014524 Gold_bad 4 4540 8 507 2 9 112562856 112545191
BC014524 Gold_excellent 12 4540 532 4018 5 9 112643750 112540406
BC014898 Gold_excellent 13 3790 1 3790 9 9 126925656 126948755
BC015401 Gold_excellent 9 2079 1 2079 0 1 164032856 164013128
BC015573 Gold_excellent 2 2009 10 2009 0 5 154223687 154225671
BC015689 Gold_good 2 1392 1 1392 13 20 62210552 62209197
BC015798 Gold_good 2 1254 1 1254 15 6 151802092 151803324
BC015938 Gold_excellent 6 3865 1 3865 9 20 18472887 18462184
BC015954 Gold_excellent 3 2092 10 2083 4 7 2187561 2218552
BC016030 Gold_excellent 4 3207 1 3207 0 22 37367174 37372619
BC016143 Gold_good 2 1254 1 1254 15 6 151802092 151803324
BC016304 Gold_excellent 5 2268 1 2268 9 3 14034054 14082480
BC016396 Gold_excellent 5 3037 1 3037 9 7 99638651 99643137
BC016902 Gold_excellent 4 1531 1 1531 5 8 21988860 21986321
BC017322 Gold_excellent 15 2813 1 2813 0 13 18005821 18044134
BC017505 Gold_excellent 13 2169 1 2169 8 11 3089789 3072880
BC018139 Gold_bad 1 819 447 89 0 12 64508046 64508135
BC018139 Gold_excellent 5 819 1 740 2 12 64503704 64537567
BC018305 Gold_bad 1 2481 1 49 0 12 30681252 30681204
BC018305 Gold_bad 1 2481 42 78 1 12 30681247 30681325
BC018305 Gold_excellent 4 2481 116 2366 2 12 30681258 30673189
BC019651 Gold_good 7 709 2 708 3 3 40459438 40464357
BC020229 Gold_excellent 11 3061 1 3061 12 X 2442474 2419327
BC020346 Gold_partial 11 2044 1 2019 9 19 50528532 50545485
BC020630 Gold_excellent 2 1340 8 1340 2 1 20279688 20278359
BC020963 Gold_good 4 3722 1 3722 17 7 75600405 75568206
BC021131 Gold_good 4 1456 1 1456 18 6 44316035 44314041
BC022361 Gold_excellent 10 1299 1 1299 4 14 73169914 73193456
BC022803 Gold_good 7 676 1 676 9 4 106854023 106749545
BC023538 Gold_excellent 2 1617 1 1617 2 19 41958215 41959818
BC023625 Gold_good 4 1146 1 1146 9 21 45203766 45205792
BC023645 Gold_good 17 3083 1 3083 22 6 37020278 37043699
BC024245 Gold_good 4 1640 1 1640 13 14 19984483 19979361
BC024306 Gold_excellent 2 1617 1 1617 2 19 41958215 41959818
BC024592 Gold_excellent 8 3682 1 3682 1 1 35451080 35460035
BC025743 Gold_partial 20 2182 1 2152 5 17 42385691 42353978
BC026216 Gold_excellent 9 4520 1 4520 17 2 65191128 65225533
BC026308 Gold_good 10 2461 3 2459 19 19 51492154 51509478
BC026326 Gold_excellent 9 3316 1 3325 6 7 79376192 79460776
BC027457 Gold_excellent 4 1913 1 1913 5 2 47253472 47276993
BC027717 Gold_excellent 11 2631 1 2631 5 1 35086394 35077385
BC027853 Gold_excellent 5 1671 1 1671 2 6 167954972 167942654
BC027853 Gold_excellent 5 1671 1 1671 2 6|NT_078020 501355 513239
BC027901 Gold_excellent 12 3126 1 3126 8 11 60645327 60670681
BC027954 Gold_excellent 4 2417 1 2417 6 7 38116017 38113516
BC028028 Gold_excellent 2 1570 1 1570 4 1 108635923 108637463
BC028063 Gold_good 7 1447 1 1447 19 19 18312424 18336024
BC028421 Gold_excellent 23 3752 4 3751 4 12 120754789 120840126
BC028700 Gold_excellent 2 3812 1 3812 13 1 209741681 209737882
BC028935 Gold_excellent 2 1941 2 1940 6 3 68959378 68957446
BC029896 Gold_good 10 2014 1 2014 14 19 56825441 56806998
BC030006 Gold_good 25 3460 3 3458 25 20 36493395 36415059
BC030717 Gold_good 3 2771 1 2771 27 1 244643865 244640159
BC030806 Gold_excellent 2 3803 1 3803 12 13 77778381 77774588
BC032000 Gold_good 14 2243 1 2243 15 5 903458 848459
BC032100 Gold_excellent 12 2669 2 2668 4 16 4476162 4507066
BC032235 Gold_excellent 3 2642 1 2642 10 11 73899444 73892465
BC032527 Gold_good 6 2219 24 2219 15 20 63011071 62997412
BC032646 Gold_excellent 22 3596 9 3596 8 11 3150804 3072660
BC032779 Gold_excellent 4 2921 1 2921 5 11 197382 192924
BC033140 Gold_excellent 7 2765 1 2765 10 14 75941285 75930781
BC033176 Gold_good 3 1165 1 1165 5 2 106130925 106132126
BC033217 Gold_bad 1 2163 1562 91 0 9 131870870 131870780
BC033217 Gold_bad 2 2163 17 100 0 9 131919942 131924243
BC033217 Gold_partial 13 2163 109 1908 5 9 131919952 131870419
BC033616 Gold_bad 1 1583 12 67 0 10 94906652 94906586
BC033616 Gold_excellent 15 1583 74 1518 1 10 94906661 94821530
BC033711 Gold_good 12 1350 12 1347 11 14 90562938 90520472
BC033724 Gold_good 13 2324 1 2324 10 12 105333301 105406441
BC033774 Gold_excellent 2 2754 12 2751 2 16 74982964 74985684
BC033873 Gold_good 6 1016 1 1016 7 19 17377457 17374759
BC033908 Gold_good 4 3847 6 3847 17 11 113788413 113769009
BC034373 Gold_excellent 17 2898 1 2898 1 11 65800609 65810690
BC034690 Gold_excellent 3 1213 1 1213 1 1 150448782 150451175
BC034936 Gold_good 5 2110 1 2092 13 X 151376836 151384680
BC035153 Gold_good 2 4183 6 4183 21 7 35476077 35480249
BC035160 Gold_excellent 2 1779 1 1779 3 1 111596886 111595126
BC035337 Gold_good 2 1954 1 1954 8 6 57002263 57000326
BC035420 Gold_excellent 16 1833 1 1833 5 12 52132180 52159883
BC035518 Gold_excellent 2 1800 11 1798 3 3 115356376 115354588
BC035625 Gold_excellent 3 3035 1 3035 2 10 63920718 63916360
BC035708 Gold_excellent 17 3627 12 3624 6 2 47180413 47277230
BC035778 Gold_excellent 12 2209 1 2209 6 10 18944556 18838497
BC035881 Gold_good 3 2788 20 2777 16 14 75595685 75587655
BC036122 Gold_good 5 2985 1 2985 17 1 89565544 89696974
BC036231 Gold_excellent 15 3170 3 3168 10 20 18442645 18373990
BC036233 Gold_excellent 19 3112 1 3112 3 12 120754804 120807960
BC036319 Gold_excellent 11 2614 1 2614 4 5 58311644 58285734
BC036326 Gold_good 2 1476 1 1476 8 9 124643902 124645363
BC036358 Gold_excellent 3 1649 1 1649 6 17 49060489 49062418
BC036746 Gold_excellent 9 3744 12 3741 1 9 103642778 103691223
BC036774 Gold_excellent 8 4917 1 4917 6 12 128542 118965
BC036902 Gold_partial 3 2281 12 2155 16 21 45270203 45265983
BC036923 Gold_excellent 3 1730 1 1730 1 9 12765046 12812124
BC036933 Gold_good 2 2311 1 2311 27 5 177547660 177545378
BC037197 Gold_bad 2 1360 949 143 1 4 171374915 171370779
BC037197 Gold_excellent 2 1360 1 1228 1 2 175613607 175612572
BC037389 Gold_excellent 2 3707 3 3705 11 2 219521209 219517513
BC038117 Gold_excellent 8 2777 6 2777 10 8 98743868 98821409
BC038227 Gold_excellent 16 6586 9 6586 10 1 151797435 151771337
BC038359 Gold_good 9 4173 1 4173 18 16 31048336 31036639
BC038448 Gold_excellent 11 2481 1 2481 1 9 35595318 35600029
BC039145 Gold_bad 1 2015 1 52 0 12 40777648 40777597
BC039145 Gold_excellent 7 2015 43 1973 2 12 40824738 40767135
BC039202 Gold_bad 2 1200 759 442 3 3 69104631 69102153
BC039202 Gold_good 3 1200 1 753 8 3 69104816 69101935
BC039304 Gold_good 5 4080 3 4078 23 7 156675780 156709265
BC039479 Gold_bad 1 576 510 67 0 17 76597372 76597439
BC039479 Gold_excellent 4 576 2 510 1 17 76597372 76625046
BC039499 Gold_excellent 3 1045 1 1045 1 10 104900764 104897149
BC039579 Gold_excellent 23 3806 1 3806 7 11 3150802 3072659
BC039685 Gold_good 3 1128 1 1128 7 10 3160390 3162828
BC040051 Gold_good 2 569 1 569 7 3 144041218 144040659
BC040116 Gold_excellent 5 612 1 612 0 7 101679808 101674369
BC040179 Gold_excellent 4 3243 5 3243 12 14 29070547 29077477
BC040193 Gold_good 3 5261 4 5258 71 16 24682434 24688097
BC040239 Gold_good 12 3592 1 3592 19 7 94837832 94824844
BC040293 Gold_good 2 2738 1 2738 14 9 107275139 107272413
BC040329 Gold_good 4 3062 1 3062 18 6 3777165 3804471
BC040457 Gold_good 19 4792 1 4792 21 5 149697828 149627564
BC040507 Gold_excellent 11 2404 3 2402 7 12 130807406 130830766
BC040565 Gold_excellent 9 2545 2 2544 6 2 174349308 174264987
BC040869 Gold_bad 1 1977 1 64 0 1 196264039 196263976
BC040869 Gold_bad 1 1977 75 122 0 1 196264581 196264460
BC040869 Gold_excellent 3 1977 195 1783 2 1 196278423 196263428
BC040914 Gold_good 4 1602 1 1602 11 4 153599597 153603493
BC040935 Gold_good 2 2020 1 2020 13 3 184335213 184337204
BC040988 Gold_good 2 2830 1 2830 26 15 81044773 81047590
BC041026 Gold_good 15 2147 1 2147 19 6 44321917 44314284
BC041045 Gold_bad 1 1467 1 44 0 1 175303087 175303131
BC041045 Gold_bad 1 1467 41 309 1 1 175302989 175302681
BC041045 Gold_excellent 8 1467 347 1121 0 1 175303033 175651409
BC041062 Gold_bad 2 2017 1357 661 1 11 718948 719626
BC041062 Gold_partial 5 2017 1 1317 8 16 57619946 57626247
BC041094 Gold_excellent 5 4045 1 4045 4 1 226722928 226696234
BC041454 Gold_good 16 1930 1 1930 12 11 26709283 26656679
BC041488 Gold_excellent 4 3368 1 3368 9 17 20933892 20970571
BC041695 Gold_partial 6 3454 248 3188 2 7 99288677 99278998
BC041839 Gold_good 5 3696 1 3696 15 4 187821519 187830052
BC041923 Gold_excellent 4 2204 3 2202 6 19 49097795 49087797
BC041932 Gold_excellent 8 1265 1 1265 4 10 62767322 62870692
BC041972 Gold_good 2 1597 1 1597 12 5 63988648 63987065
BC041989 Gold_good 2 2242 1 2242 15 1 231826523 231824293
BC042109 Gold_excellent 6 2411 1 2411 6 9 135010033 135006133
BC042157 Gold_excellent 2 2624 1 2624 10 3 130430346 130427733
BC042166 Gold_good 5 2110 1 2092 13 X 151376836 151384680
BC042174 Gold_good 10 2145 1 2145 15 12 51494130 51486600
BC042369 Gold_excellent 5 923 1 923 3 9 134979929 134976404
BC042436 Gold_excellent 3 3825 1 3825 8 12 12958340 12962143
BC042439 Gold_good 2 3694 1 3694 16 9 14604754 14601070
BC042486 Gold_excellent 10 4135 1 4135 5 2 26179888 26125193
BC042634 Gold_excellent 5 4243 1 4243 8 5 141366178 141353029
BC042667 Gold_good 4 1546 1 1546 13 9 134979929 134976404
BC042680 Gold_good 7 1398 1 1398 11 17 81372321 81387886
BC042684 Gold_excellent 12 3627 3 3625 8 5 158617454 158565314
BC042993 Gold_good 3 2483 7 2483 13 4 36900618 36919510
BC043159 Gold_good 2 3950 1 3950 20 6 105291549 105295478
BC043222 Gold_good 2 2691 1 2691 11 8 97113981 97111305
BC043367 Gold_excellent 4 1653 1 1653 2 10 104903584 104897165
BC043572 Gold_excellent 5 2002 1 2002 4 3 132421228 132364846
BC044229 Gold_good 3 1981 1 1981 10 9 127627424 127643404
BC044767 Gold_excellent 12 3627 3 3625 8 5 158617454 158565314
BC045610 Gold_excellent 11 2409 14 2409 8 12 130807400 130830767
BC045666 Gold_excellent 11 3720 1 3720 10 11 44936020 44918218
BC045726 Gold_good 2 1651 3 1649 8 21 29223975 29222338
BC046247 Gold_excellent 4 4557 1 4557 10 15 99527390 99451197
BC046564 Gold_partial 3 2256 1 2133 15 21 45270186 45265985
BC046997 Gold_good 2 1455 1 1455 14 13 107619983 107621423
BC047443 Gold_good 4 1520 1 1520 14 10 1186506 1182073
BC047604 Gold_partial 12 4419 247 4185 16 9 134558047 134537510
BC047671 Gold_good 6 2201 1 2201 15 20 63011058 62997417
BC047790 Gold_excellent 8 2623 1 2623 8 20 61736431 61723959
BC047916 Gold_excellent 9 2262 1 2262 4 22 41970266 41864523
BC049371 Gold_good 2 4183 1 4183 23 7 35476078 35480249
BC050112 Gold_excellent 4 2489 1 2489 7 9 91779285 91783186
BC050473 Gold_good 9 1574 1 1574 9 15 61056466 61078647
BC051732 Gold_excellent 16 4179 1 4179 7 17 73854825 73829818
BC051735 Gold_bad 1 1979 1 241 0 14 98738925 98739166
BC051735 Gold_excellent 1 1979 256 1723 7 14 98737440 98739163
BC052294 Gold_excellent 14 2310 1 2310 4 16 28980943 28988298
BC052569 Gold_excellent 2 5282 1 5282 17 15 64711233 64716430
BC052571 Gold_bad 1 3371 2561 811 2 2 28997628 28998438
BC052571 Gold_bad 5 3371 1916 636 0 X 46557182 46564498
BC052571 Gold_partial 2 3371 1 1856 9 19 18253418 18251570
BC052604 Gold_excellent 6 1173 1 1173 0 17 16457379 16446415
BC052618 Gold_excellent 6 2686 1 2686 8 X 13114143 13091792
BC052973 Gold_excellent 5 4297 1 4297 7 5 141366235 141353031
BC053539 Gold_excellent 2 2186 1 2186 7 1 231826462 231824286
BC053545 Gold_good 9 1573 1 1573 11 15 61056455 61078647
BC054038 Gold_bad 1 837 772 66 1 2 102129784 102129876
BC054038 Gold_good 1 837 1 779 3 2 102129784 102130564
BC054492 Gold_excellent 27 4623 1 4582 8 9 121079353 121242755
BC054502 Gold_excellent 17 5310 1 5310 3 2 11774124 11804653
BC056873 Gold_good 6 2234 1 2234 15 20 63011086 62997412
BC057219 Gold_good 12 1100 5 1100 10 4 106854036 106749545
BC057767 Gold_good 14 2117 4 2114 22 20 36493400 36442653
BC058024 Gold_excellent 2 1678 4 1678 2 11 100400713 100402382
BC059404 Gold_excellent 10 3579 2 3578 8 17 7126934 7133526
BC062298 Gold_excellent 11 1470 1 1470 5 16 31057831 31039663
BC062315 Gold_good 3 1132 1 1132 10 21 45203966 45205792
BC062348 Gold_excellent 3 1917 1 1917 0 14 22413458 22398953
BC062355 Gold_good 7 3502 1 3502 19 7 127835353 127849808
BC062579 Gold_good 13 1963 1 1963 25 1 1588617 1582122
BC063125 Gold_excellent 8 2988 3 2986 7 3 5138930 5197591
BC063285 Gold_excellent 15 5158 1 5158 9 17 73854827 73829818
BC063416 Gold_excellent 18 2506 1 2506 4 19 53305876 53242913
BC063453 Gold_excellent 12 3245 1 3245 5 17 16891937 16920417
BC063714 Gold_excellent 4 1474 1 1474 2 16 2723296 2710272
BC063890 Gold_good 4 2537 1 2537 17 21 13357133 13362057
BC064381 Gold_excellent 7 2594 1 2594 1 2 44370571 44433145
BC064604 Gold_excellent 5 3277 1 3277 2 16 74962033 74985684
BC064613 Gold_excellent 9 2935 1 2935 5 9 91680438 91783276
BC064952 Gold_good 2 710 1 710 7 4 36917057 36917754
BC064966 Gold_excellent 8 2883 1 2883 9 6 33328908 33314362
BC064982 Gold_bad 1 1205 942 95 3 13 111570313 111570219
BC064982 Gold_partial 2 1205 1 1085 9 13 111570953 111569852
BC064994 Gold_excellent 27 3519 1 3519 6 17 74118943 74168411
BC065242 Gold_good 20 4301 1 4301 26 17 5386160 5488621
BC065295 Gold_excellent 10 3592 1 3592 13 8 27652023 27612747
BC065554 Gold_bad 1 2188 1 39 0 2 47176703 47176742
BC065554 Gold_excellent 17 2188 61 2128 0 2 47176703 47275722
BC065557 Gold_excellent 2 1301 1 1301 3 11 44919493 44918212
BC065711 Gold_excellent 5 942 13 942 0 7 101679813 101674044
BC065914 Gold_excellent 2 2322 12 2322 4 12 55278409 55276100