Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
BC002783 | Gold_dubious | 4 | 1536 | 9 | 1455 | 23 | 9|NT_078081 | 34796 | 80376 |
BC004542 | Gold_dubious | 4 | 2139 | 1109 | 1040 | 1 | 22 | 48897363 | 48895442 |
BC005382 | Gold_dubious | 2 | 440 | 1 | 440 | 8 | X | 139480257 | 139479171 |
BC009017 | Gold_dubious | 3 | 664 | 1 | 664 | 13 | 1 | 150777280 | 150775658 |
BC010437 | Gold_dubious | 5 | 2780 | 1 | 2642 | 41 | 2 | 170793066 | 170809543 |
BC012036 | Gold_dubious | 2 | 1063 | 1 | 1063 | 21 | 18 | 19876126 | 19877220 |
BC012205 | Gold_dubious | 5 | 776 | 1 | 776 | 19 | 4 | 84489391 | 84470240 |
BC012362 | Gold_dubious | 6 | 1913 | 1 | 1910 | 38 | 3 | 154200968 | 154234099 |
BC012372 | Gold_dubious | 6 | 732 | 1 | 732 | 18 | 6 | 32073055 | 32074626 |
BC012835 | Gold_dubious | 4 | 1538 | 1 | 1465 | 33 | 9|NT_078081 | 34786 | 80376 |
BC014144 | Gold_dubious | 9 | 1891 | 1 | 1891 | 38 | 19 | 11452796 | 11424304 |
BC016929 | Gold_dubious | 6 | 1326 | 1 | 1326 | 22 | 6 | 31475556 | 31487236 |
BC017443 | Gold_dubious | 14 | 2744 | 1 | 1366 | 14 | 7 | 129769798 | 129699375 |
BC017652 | Gold_dubious | 5 | 1195 | 1 | 1195 | 20 | 2 | 37400185 | 37404322 |
BC017907 | Gold_dubious | 1 | 1351 | 1091 | 261 | 2 | 2 | 240043983 | 240044243 |
BC020756 | Gold_dubious | 6 | 983 | 1 | 980 | 27 | 17 | 62447360 | 62426124 |
BC021247 | Gold_dubious | 6 | 4009 | 2004 | 2015 | 3 | 1 | 28503193 | 28514331 |
BC028035 | Gold_dubious | 3 | 2371 | 7 | 714 | 1 | 22 | 42051852 | 42101783 |
BC029266 | Gold_bad | 2 | 3230 | 1 | 157 | 0 | 1 | 28300922 | 28338663 |
BC029266 | Gold_dubious | 5 | 3230 | 1901 | 1330 | 1 | 1 | 28503193 | 28511553 |
BC029568 | Gold_dubious | 6 | 1136 | 172 | 965 | 24 | 4 | 191167442 | 191193899 |
BC032340 | Gold_dubious | 3 | 1271 | 1 | 299 | 0 | X | 2014109 | 1921916 |
BC032340 | Gold_dubious | 3 | 1271 | 1 | 299 | 0 | Y | 2014109 | 1921916 |
BC032427 | Gold_dubious | 3 | 2369 | 1 | 458 | 0 | 1 | 25420343 | 25438287 |
BC032544 | Gold_dubious | 3 | 1939 | 12 | 359 | 0 | 1 | 45586232 | 45573280 |
BC032654 | Gold_dubious | 23 | 3950 | 12 | 3947 | 71 | 4 | 77108254 | 77193759 |
BC033064 | Gold_dubious | 5 | 1052 | 1 | 1052 | 23 | 12 | 47945156 | 47953381 |
BC033389 | Gold_bad | 1 | 1421 | 102 | 73 | 4 | 7 | 57489014 | 57488941 |
BC033389 | Gold_dubious | 2 | 1421 | 174 | 1248 | 32 | 4 | 191168036 | 191169917 |
BC034024 | Gold_dubious | 1 | 1154 | 1 | 1154 | 27 | 1 | 141937918 | 141936765 |
BC038998 | Gold_dubious | 10 | 1353 | 9 | 1353 | 22 | X | 145661193 | 145682893 |
BC040074 | Gold_dubious | 2 | 2607 | 1 | 871 | 0 | 7 | 288196 | 290815 |
BC041615 | Gold_dubious | 4 | 637 | 1 | 636 | 10 | 19 | 62885225 | 62961518 |
BC047440 | Gold_dubious | 3 | 1457 | 1 | 422 | 1 | 20 | 32047051 | 32031373 |
BC048328 | Gold_dubious | 11 | 1718 | 1 | 1718 | 39 | 2 | 114436847 | 114451759 |
BC048328 | Gold_dubious | 11 | 1718 | 1 | 1718 | 40 | 15 | 100237097 | 100252030 |