Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
BC001911 Gold_partial 4 1526 4 1450 18 9|NT_078081 34801 80376
BC002885 Gold_partial 4 1533 11 1450 18 9|NT_078081 34801 80376
BC004188 Gold_partial 4 1529 16 1450 18 9|NT_078081 34801 80376
BC005974 Gold_partial 8 1128 1 1102 2 1 168950470 168912435
BC007287 Gold_partial 8 3323 1 3201 8 16 3185424 3193090
BC007838 Gold_partial 10 2544 1 2440 3 17 81285090 81251266
BC007889 Gold_partial 4 1527 5 1450 18 9|NT_078081 34801 80376
BC008864 Gold_bad 2 1622 805 174 0 20 2811750 2811248
BC008864 Gold_good 7 1622 1 1472 10 20 2816246 2810971
BC012056 Gold_partial 8 2839 1 2774 7 10 5712541 5684836
BC015223 Gold_partial 3 1329 1 1224 6 8 144745355 144744125
BC016564 Gold_partial 13 2014 1 1750 2 5 179107590 179146705
BC019359 Gold_partial 4 1529 7 1450 18 9|NT_078081 34801 80376
BC022508 Gold_partial 7 2835 1 2744 5 4 177429305 177250403
BC022528 Gold_partial 8 2857 4 2761 2 4 177619371 177250394
BC024038 Gold_partial 4 1527 5 1450 19 9|NT_078081 34801 80376
BC032571 Gold_partial 16 2372 1 2109 1 5 179099898 179146705
BC034673 Gold_partial 29 4964 1 4717 5 17 4943192 5001969
BC036910 Gold_partial 13 1597 1 1577 2 22 22153721 22128828
BC037197 Gold_bad 2 1360 949 143 1 4 171374915 171370779
BC037197 Gold_excellent 2 1360 1 1228 1 2 175613607 175612572
BC039175 Gold_partial 4 1536 14 1450 19 9|NT_078081 34801 80376
BC041695 Gold_partial 6 3454 248 3188 2 7 99288677 99278998
BC041700 Gold_good 21 5372 1 5372 36 17 5386157 5489695
BC044612 Gold_partial 8 2808 1 2715 8 4 177429792 177250913
BC054492 Gold_excellent 27 4623 1 4582 8 9 121079353 121242755