Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
BC001911 | Gold_partial | 4 | 1526 | 4 | 1450 | 18 | 9|NT_078081 | 34801 | 80376 |
BC002885 | Gold_partial | 4 | 1533 | 11 | 1450 | 18 | 9|NT_078081 | 34801 | 80376 |
BC004188 | Gold_partial | 4 | 1529 | 16 | 1450 | 18 | 9|NT_078081 | 34801 | 80376 |
BC005974 | Gold_partial | 8 | 1128 | 1 | 1102 | 2 | 1 | 168950470 | 168912435 |
BC007287 | Gold_partial | 8 | 3323 | 1 | 3201 | 8 | 16 | 3185424 | 3193090 |
BC007838 | Gold_partial | 10 | 2544 | 1 | 2440 | 3 | 17 | 81285090 | 81251266 |
BC007889 | Gold_partial | 4 | 1527 | 5 | 1450 | 18 | 9|NT_078081 | 34801 | 80376 |
BC008864 | Gold_bad | 2 | 1622 | 805 | 174 | 0 | 20 | 2811750 | 2811248 |
BC008864 | Gold_good | 7 | 1622 | 1 | 1472 | 10 | 20 | 2816246 | 2810971 |
BC012056 | Gold_partial | 8 | 2839 | 1 | 2774 | 7 | 10 | 5712541 | 5684836 |
BC015223 | Gold_partial | 3 | 1329 | 1 | 1224 | 6 | 8 | 144745355 | 144744125 |
BC016564 | Gold_partial | 13 | 2014 | 1 | 1750 | 2 | 5 | 179107590 | 179146705 |
BC019359 | Gold_partial | 4 | 1529 | 7 | 1450 | 18 | 9|NT_078081 | 34801 | 80376 |
BC022508 | Gold_partial | 7 | 2835 | 1 | 2744 | 5 | 4 | 177429305 | 177250403 |
BC022528 | Gold_partial | 8 | 2857 | 4 | 2761 | 2 | 4 | 177619371 | 177250394 |
BC024038 | Gold_partial | 4 | 1527 | 5 | 1450 | 19 | 9|NT_078081 | 34801 | 80376 |
BC032571 | Gold_partial | 16 | 2372 | 1 | 2109 | 1 | 5 | 179099898 | 179146705 |
BC034673 | Gold_partial | 29 | 4964 | 1 | 4717 | 5 | 17 | 4943192 | 5001969 |
BC036910 | Gold_partial | 13 | 1597 | 1 | 1577 | 2 | 22 | 22153721 | 22128828 |
BC037197 | Gold_bad | 2 | 1360 | 949 | 143 | 1 | 4 | 171374915 | 171370779 |
BC037197 | Gold_excellent | 2 | 1360 | 1 | 1228 | 1 | 2 | 175613607 | 175612572 |
BC039175 | Gold_partial | 4 | 1536 | 14 | 1450 | 19 | 9|NT_078081 | 34801 | 80376 |
BC041695 | Gold_partial | 6 | 3454 | 248 | 3188 | 2 | 7 | 99288677 | 99278998 |
BC041700 | Gold_good | 21 | 5372 | 1 | 5372 | 36 | 17 | 5386157 | 5489695 |
BC044612 | Gold_partial | 8 | 2808 | 1 | 2715 | 8 | 4 | 177429792 | 177250913 |
BC054492 | Gold_excellent | 27 | 4623 | 1 | 4582 | 8 | 9 | 121079353 | 121242755 |