Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
BC000109 Gold_excellent 5 951 1 951 0 19 15096968 15086787
BC000122 Gold_excellent 12 2346 1 2346 1 9 124465193 124645364
BC000147 Gold_excellent 14 2490 1 2490 1 18 46657477 46726245
BC000259 Gold_excellent 6 2579 1 2579 0 5 137750178 137761615
BC000506 Gold_excellent 10 1523 1 1523 1 7 25982616 25973739
BC000579 Gold_excellent 9 1387 1 1387 0 17 1794732 1760515
BC000607 Gold_excellent 4 874 10 874 0 17 80528442 80536946
BC000767 Gold_excellent 4 969 1 969 0 2 242893519 242844583
BC000767 Gold_excellent 4 969 1 969 0 2|NT_079503 50574 1639
BC000805 Gold_excellent 8 1213 1 1213 0 1 202896727 202864542
BC001132 Gold_excellent 7 1263 1 1263 1 12 112035202 112008255
BC001175 Gold_excellent 16 2853 1 2853 0 6 42999185 43026934
BC001364 Gold_partial 5 1443 192 1252 10 1 142852592 142865268
BC001442 Gold_excellent 10 1414 1 1414 0 19 614206 598534
BC001513 Gold_excellent 5 2097 1 2097 0 15 38902857 38912228
BC001528 Gold_excellent 2 1435 1 1435 3 19 3073456 3074994
BC001550 Gold_excellent 2 1201 1 1201 0 1 26794339 26795635
BC001682 Gold_partial 3 1325 41 1285 5 15 88539022 88545207
BC001712 Gold_excellent 7 2225 1 2225 3 20 57649717 57706027
BC001787 Gold_good 7 2422 1 2421 10 14 88411074 88251382
BC001798 Gold_excellent 14 3017 1 3017 2 14 33089354 33020657
BC001899 Gold_good 4 1743 1 1743 12 19 53891090 53900998
BC001914 Gold_excellent 8 2789 1 2789 1 7 150063674 150038263
BC002433 Gold_excellent 15 1932 1 1932 3 3 53247377 53217021
BC002492 Gold_excellent 16 2088 1 2088 0 19 13088293 13076721
BC002499 Gold_excellent 10 2081 13 2077 3 20 55651144 55629868
BC002552 Gold_excellent 11 1349 1 1349 0 19 3523953 3530079
BC002594 Gold_excellent 12 2008 1 2008 5 1 20457419 20447748
BC002694 Gold_excellent 4 1108 1 1108 1 1 28260254 28267165
BC002713 Gold_excellent 5 1485 1 1485 1 4 2225462 2212830
BC002754 Gold_excellent 3 2297 1 2297 5 12 52618896 52626594
BC002914 Gold_excellent 9 1635 1 1635 2 2 175665026 175629453
BC002945 Gold_excellent 10 1820 1 1820 0 9 135059904 135092932
BC003072 Gold_excellent 13 2192 1 2192 4 10 42856533 42906275
BC003683 Gold_excellent 11 1198 1 1198 1 17 27370190 27351921
BC004119 Gold_excellent 18 2643 1 2643 2 9 126329184 126304395
BC004261 Gold_excellent 4 1308 1 1308 0 5 176854768 176864135
BC004270 Gold_excellent 7 3480 1 3480 5 1 203764578 203846305
BC004349 Gold_excellent 14 1306 1 1306 0 19 5929102 5868017
BC004470 Gold_excellent 4 741 1 741 1 16 31250307 31248869
BC004500 Gold_excellent 7 819 1 819 3 9 91199922 91216973
BC004865 Gold_excellent 15 2287 1 2287 2 19 50150442 50188432
BC005000 Gold_excellent 10 1915 1 1915 1 12 67919647 67949986
BC005028 Gold_excellent 8 1862 1 1862 1 X 90308 112199
BC005028 Gold_excellent 8 1862 1 1862 1 Y 90308 112199
BC005050 Gold_excellent 7 1546 1 1546 1 3 49425686 49419392
BC005140 Gold_excellent 14 2949 1 2949 6 15 89267547 89239043
BC005164 Gold_good 4 2156 2 2155 11 15 86899145 86905280
BC005321 Gold_excellent 7 1186 1 1185 0 6 131874936 131886036
BC005901 Gold_excellent 11 976 1 976 1 12 8706541 8689807
BC005937 Gold_excellent 9 1803 3 1801 2 6 142448986 142521308
BC006182 Gold_excellent 6 2082 1 2091 6 19 51796247 51805878
BC006190 Gold_excellent 17 2969 1 2969 1 X 46124097 46135374
BC006191 Gold_excellent 16 3424 1 3424 2 11 46603394 46660371
BC006277 Gold_excellent 8 1109 1 1109 2 7 129145725 129023590
BC006291 Gold_excellent 8 2142 1 2142 2 16 57810748 57830912
BC006295 Gold_excellent 3 1019 1 1019 2 17 64106545 64074786
BC006364 Gold_excellent 38 3720 1 3720 2 17 81388796 81579391
BC006375 Gold_excellent 4 2208 1 2208 1 12 66328881 66338949
BC006570 Gold_excellent 5 2224 1 2224 4 19 6453304 6445332
BC007096 Gold_excellent 4 1441 1 1441 2 20 44521103 44523837
BC007199 Gold_good 10 3506 1 3505 23 2 96967591 97003028
BC007203 Gold_excellent 7 3480 1 3480 5 1 203764578 203846305
BC007284 Gold_excellent 4 2048 1 2048 3 19 3723217 3720091
BC007312 Gold_excellent 6 1514 1 1514 1 19 41039650 41049876
BC007315 Gold_excellent 7 2492 1 2492 2 8 17114713 17097104
BC007494 Gold_excellent 3 1444 1 1444 0 10 76506116 76502854
BC007560 Gold_excellent 9 3640 1 3640 14 17 37401283 37452985
BC007580 Gold_excellent 9 2571 1 2571 2 14 21441675 21431154
BC007592 Gold_excellent 12 2021 1 2021 1 17 74260565 74300885
BC007717 Gold_excellent 5 2907 1 2907 1 19 63670271 63676593
BC007756 Gold_excellent 6 1870 1 1870 1 12 55769210 55775526
BC007763 Gold_excellent 11 2444 1 2444 1 13 111190450 111148799
BC007795 Gold_excellent 21 2512 1 2512 0 10 27447291 27404674
BC007874 Gold_excellent 14 2463 1 2472 2 9 128731060 128789784
BC007948 Gold_excellent 6 2372 1 2372 0 7 5376795 5390617
BC007956 Gold_excellent 2 2299 1 2299 1 1 54600079 54592491
BC007986 Gold_excellent 8 1028 1 1028 0 17 76780234 76767296
BC008377 Gold_excellent 9 1820 1 1819 1 18 5620642 5382694
BC008741 Gold_excellent 14 3190 1 3190 4 4 95831463 96045026
BC008797 Gold_excellent 11 1581 1 1581 1 18 59183454 59147027
BC008803 Gold_excellent 16 2382 1 2382 1 20 46208931 46502912
BC008827 Gold_excellent 9 3995 1 3995 5 1 33440732 33464466
BC008849 Gold_excellent 2 1721 9 1722 1 17 40948354 40928819
BC008854 Gold_excellent 5 1388 1 1388 2 1 152441930 152433792
BC008864 Gold_bad 2 1622 805 174 0 20 2811750 2811248
BC008864 Gold_good 7 1622 1 1472 10 20 2816246 2810971
BC008884 Gold_excellent 8 1246 1 1246 1 3 196945973 196916757
BC008900 Gold_excellent 22 3191 1 3191 1 17 35086225 35047150
BC008950 Gold_excellent 6 744 1 744 1 19 47155320 47152679
BC008958 Gold_excellent 5 1165 1 1165 0 19 53586610 53577647
BC009197 Gold_excellent 7 1226 1 1226 0 22 16631777 16591462
BC009308 Gold_excellent 14 2475 1 2475 2 16 31555760 31536875
BC009409 Gold_excellent 2 1784 1 1784 1 1 58412830 58411021
BC009411 Gold_excellent 11 1987 1 1987 1 1 111290590 111281623
BC009433 Gold_excellent 8 2177 1 2177 6 19 58716183 58773144
BC009460 Gold_excellent 12 1494 1 1494 1 6 43028848 43035884
BC009504 Gold_excellent 8 2571 1 2571 0 22 29880743 29927552
BC009568 Gold_excellent 3 1213 1 1213 1 16 1980001 1984269
BC009631 Gold_excellent 8 966 1 966 0 16 2241489 2229824
BC009797 Gold_excellent 6 1144 3 1141 0 X 47690957 47698693
BC009975 Gold_excellent 10 2657 1 2657 2 17 6174993 6225185
BC009993 Gold_excellent 8 1710 1 1710 2 3 130318724 130345054
BC010065 Gold_excellent 21 2591 1 2591 1 19 2102535 2053035
BC010106 Gold_excellent 12 2882 1 2882 0 12 54980370 54951754
BC010618 Gold_excellent 5 1398 1 1398 5 14 29916670 29906237
BC010623 Gold_excellent 6 3776 1 3776 1 17 46600342 46612763
BC011553 Gold_excellent 7 1150 1 1150 4 19 50887795 50899086
BC011600 Gold_bad 10 2421 26 1070 0 6 32030426 32024198
BC011600 Gold_partial 2 2421 1119 1312 6 11 8963940 8965403
BC011609 Gold_excellent 10 2993 1 2993 0 2 220346637 220354161
BC011662 Gold_excellent 8 705 1 705 1 19 54837290 54853710
BC011720 Gold_good 19 2875 1 2875 12 X 53523533 53558507
BC011721 Gold_excellent 6 1388 1 1388 0 13 17553935 17545920
BC011865 Gold_excellent 16 3154 1 3154 4 17 40314632 40284033
BC011878 Gold_good 8 2182 1 2182 11 12 115588069 115702699
BC012115 Gold_excellent 5 2268 1 2268 2 9 34979759 34988424
BC012460 Gold_good 9 3507 1 3507 17 17 37401359 37452977
BC012736 Gold_excellent 10 3292 1 3292 0 10 50917030 50935337
BC012938 Gold_excellent 8 2165 1 2165 2 7 72404987 72396092
BC013348 Gold_excellent 6 2341 1 2341 0 15 63877648 63897606
BC013386 Gold_good 4 1376 1 1376 7 12 120462857 120478245
BC013393 Gold_excellent 16 3745 1 3745 1 4 2877063 2963216
BC013577 Gold_excellent 4 2141 1 2141 2 3 171457578 171472796
BC013906 Gold_excellent 2 1574 1 1574 1 7 105861903 105860294
BC013974 Gold_excellent 5 3499 1 3499 6 1 30852890 30844786
BC014029 Gold_excellent 15 2247 1 2247 1 7 156348559 156426781
BC014107 Gold_excellent 4 1595 1 1595 0 7 139780233 139802185
BC014137 Gold_excellent 8 2334 1 2334 1 20 62162551 62171701
BC014214 Gold_excellent 23 3079 1 3079 1 19 54962094 55002179
BC014247 Gold_excellent 8 1373 1 1373 1 20 2816790 2810974
BC014277 Gold_excellent 5 2491 1 2491 0 22 31522299 31581530
BC014364 Gold_excellent 9 1512 1 1512 1 1 237535051 237679632
BC014399 Gold_excellent 8 1668 1 1668 0 10 79089681 79073612
BC014943 Gold_excellent 6 1805 1 1805 2 1 9713033 9753259
BC014967 Gold_excellent 6 1556 1 1556 0 17 78513188 78507213
BC015565 Gold_excellent 3 2273 10 2273 1 17 47178355 47173159
BC015621 Gold_excellent 5 2835 1 2835 3 14 53508442 53526261
BC015714 Gold_excellent 19 2816 1 2816 0 11 46106985 45919343
BC015914 Gold_excellent 20 2528 1 2528 1 1 27295130 27286365
BC015958 Gold_excellent 16 2756 1 2756 2 8 101690874 101671726
BC015993 Gold_excellent 7 1413 5 1413 0 1 54459116 54444773
BC016043 Gold_excellent 6 1493 1 1493 0 19 55072264 55064111
BC016154 Gold_excellent 3 1280 1 1280 0 12 45896637 45916708
BC016664 Gold_excellent 5 2275 1 2275 0 19 53016976 53038392
BC016788 Gold_excellent 3 1196 5 1195 2 6 150215625 150271635
BC016791 Gold_excellent 5 1976 1 1976 3 17 42616415 42587169
BC016842 Gold_excellent 11 2285 1 2285 0 19 39355192 39410838
BC016915 Gold_excellent 6 1979 1 1979 1 X 13114143 13091792
BC017018 Gold_excellent 6 1104 1 1104 0 10 68942476 68901031
BC017022 Gold_excellent 9 2107 1 2107 8 22 37660535 37672295
BC017206 Gold_excellent 8 1871 1 1871 4 19 63679622 63684405
BC017237 Gold_excellent 7 1127 1 1127 1 19 13122160 13115873
BC017269 Gold_excellent 5 1646 1 1646 3 10 11869403 11916877
BC017331 Gold_excellent 8 1994 10 1994 2 22 34921009 34935390
BC017801 Gold_excellent 10 1124 1 1124 3 1 217319425 217287364
BC017802 Gold_good 3 875 1 875 9 1 150190807 150192913
BC017918 Gold_excellent 5 1316 1 1315 2 9 36126730 36153902
BC018706 Gold_excellent 13 3496 1 3496 1 17 39025452 39005255
BC018969 Gold_good 8 688 9 688 3 6 166665279 166642807
BC018991 Gold_excellent 7 2077 2 2076 4 1 153938184 153928693
BC019104 Gold_excellent 3 1369 1 1369 1 8 143871708 143881362
BC019225 Gold_excellent 8 1281 4 1281 0 5 138795217 138779114
BC019330 Gold_excellent 7 1948 1 1948 1 3 128668936 128712554
BC019643 Gold_excellent 5 1999 2 2006 1 22 41241858 41210668
BC019655 Gold_excellent 9 1333 1 1333 1 15 62159755 62163836
BC019823 Gold_excellent 5 1498 1 1498 3 20 45147919 45156940
BC020225 Gold_excellent 17 2269 1 2269 8 22 20196334 20151843
BC020238 Gold_excellent 16 1908 1 1908 0 17 74665700 74632798
BC020256 Gold_excellent 23 3536 1 3536 1 15 78787555 78957328
BC020768 Gold_excellent 3 2223 1 2223 4 11 4683258 4665710
BC020792 Gold_excellent 14 1488 1 1487 1 3 121722025 121667922
BC020792 Gold_excellent 14 1488 1 1487 1 3|NT_079506 19192 73302
BC020866 Gold_excellent 2 1805 1 1804 0 21 30508799 30506772
BC020873 Gold_excellent 14 1522 1 1522 4 1 15732969 15746499
BC020987 Gold_excellent 15 2958 1 2958 2 3 47445174 47415795
BC021186 Gold_excellent 6 695 7 689 2 19 40928146 40925273
BC021209 Gold_excellent 3 3113 1 3113 1 17 17886012 17915283
BC021564 Gold_excellent 4 1261 1 1261 0 12 47811431 47807836
BC021896 Gold_excellent 4 1774 1 1774 0 3 52280345 52285955
BC022075 Gold_excellent 4 1217 5 1217 3 15 49759838 49731325
BC022309 Gold_excellent 5 958 1 958 1 1 171125872 171112324
BC022361 Gold_excellent 10 1299 1 1299 4 14 73169914 73193456
BC022367 Gold_excellent 6 2059 1 2059 0 6 127420389 127498562
BC022519 Gold_excellent 5 2285 1 2285 4 13 48308444 48284847
BC022520 Gold_good 11 1995 1 1995 9 7 86869799 87071784
BC022792 Gold_excellent 20 4303 1 4303 0 3 51492955 51394321
BC023506 Gold_good 9 1262 1 1262 6 X 117453460 117426218
BC023623 Gold_excellent 10 1784 1 1784 0 19 45539632 45518830
BC024023 Gold_excellent 5 1384 8 1377 1 5 95062891 95066916
BC024325 Gold_excellent 18 5037 1 5037 0 7 128418025 128623064
BC025777 Gold_excellent 19 3724 1 3723 3 6 136852123 136644443
BC025926 Gold_excellent 16 3446 1 3446 8 19 3136963 3160569
BC026035 Gold_excellent 17 2534 1 2534 1 4 2996473 2971254
BC026241 Gold_excellent 10 1866 1 1866 1 7 156348465 156398845
BC026258 Gold_excellent 7 2808 1 2808 11 15 56146636 56194166
BC026330 Gold_excellent 14 3010 1 3010 9 16 83930168 83867070
BC027207 Gold_excellent 18 2933 1 2933 3 3 47429617 47415795
BC028100 Gold_excellent 4 3506 1 3506 3 15 84067876 84032329
BC028178 Gold_excellent 41 3878 12 3875 1 2 190041655 190079322
BC028224 Gold_excellent 2 2813 1 2813 5 16 88461574 88454055
BC028225 Gold_excellent 10 1751 1 1751 0 X 47860821 47825465
BC028237 Gold_excellent 3 2075 1 2075 5 10 47833741 47820393
BC029399 Gold_excellent 10 1391 1 1391 3 9 99577894 99563672
BC029588 Gold_excellent 2 775 1 775 1 21 42336514 42339163
BC030060 Gold_excellent 7 2130 1 2130 6 19 44215005 44206505
BC030130 Gold_excellent 9 3171 1 3171 0 4 6336185 6369151
BC030558 Gold_excellent 6 2667 17 2667 2 9 131601182 131611924
BC030558 Gold_excellent 6 2667 17 2667 2 9|NT_079538 124520 135262
BC031097 Gold_excellent 7 2538 2 2537 7 21 45149797 45125717
BC031211 Gold_good 2 2319 1 2318 10 5 95843025 95800113
BC031481 Gold_excellent 6 957 1 957 0 6 37834546 38167262
BC032219 Gold_excellent 15 2640 1 2640 5 17 73566005 73543961
BC032348 Gold_excellent 8 3036 1 3036 3 3 184594390 184528653
BC032549 Gold_excellent 6 2814 12 2811 3 11 110787622 110760626
BC032665 Gold_excellent 20 3587 12 3584 5 16 22184309 22264504
BC032825 Gold_good 9 2491 1 2491 10 9 17569064 17787121
BC033070 Gold_excellent 13 2921 1 2921 0 12 112170636 112148539
BC033074 Gold_excellent 15 1992 1 1992 4 17 27147135 27174314
BC033088 Gold_excellent 8 1692 1 1692 2 1 153301309 153324448
BC033680 Gold_excellent 7 1517 1 1517 1 1 85353420 85206762
BC033739 Gold_excellent 2 2778 1 2778 2 16 88461567 88454055
BC033925 Gold_excellent 10 2879 2 2878 0 1 152160015 152151567
BC034236 Gold_good 5 2086 1 2086 27 19 19748189 19728180
BC034383 Gold_excellent 6 809 1 806 0 19 43587451 43591561
BC034494 Gold_excellent 13 3702 1 3702 3 20 61404227 61442945
BC034988 Gold_excellent 29 3462 2 3461 4 17 19933255 19836172
BC035334 Gold_excellent 16 2346 1 2346 2 16 89386009 89407443
BC035608 Gold_excellent 18 3647 1 3647 7 14 50525804 50461559
BC035914 Gold_excellent 7 3109 37 3081 8 14 89742051 89727710
BC035973 Gold_excellent 11 2883 1 2883 2 3 38267928 38280781
BC036099 Gold_excellent 20 2932 1 2932 1 15 78412562 78606088
BC036316 Gold_excellent 2 3435 1 3435 2 16 57256668 57252459
BC036784 Gold_excellent 5 3485 1 3485 4 4 82851439 82830443
BC037428 Gold_excellent 10 3095 12 3092 1 19 10305195 10287891
BC039203 Gold_excellent 14 5509 1 5509 7 7 21977669 21902241
BC039582 Gold_excellent 15 2229 1 2229 2 17 72867509 72908145
BC039704 Gold_excellent 3 817 12 814 1 12 121052948 121056229
BC040455 Gold_excellent 10 1414 1 1414 2 17 75179050 75158585
BC041016 Gold_good 13 1891 3 1889 8 5 271139 309532
BC042057 Gold_excellent 7 1818 1 1818 2 14 71694296 71731386
BC042109 Gold_excellent 6 2411 1 2411 6 9 135010033 135006133
BC042127 Gold_excellent 2 904 1 904 0 11 2115775 2114660
BC042486 Gold_excellent 10 4135 1 4135 5 2 26179888 26125193
BC042510 Gold_excellent 12 2267 1 2267 1 9 131213425 131223293
BC042650 Gold_excellent 2 3457 1 3457 1 5 140893150 140921039
BC043394 Gold_excellent 18 3573 1 3573 0 4 74590735 74407658
BC043503 Gold_excellent 13 2885 1 2885 5 2 66637066 66774122
BC043644 Gold_good 3 3975 1 3975 17 20 4697556 4704105
BC047522 Gold_excellent 13 3979 1 3979 7 19 3175735 3247334
BC047523 Gold_excellent 7 3702 1 3702 9 14 88853414 88864436
BC047706 Gold_excellent 9 1399 1 1399 1 7 73679914 73645451
BC047751 Gold_excellent 2 1484 1 1484 2 X 52221159 52187770
BC050050 Gold_excellent 11 2520 2 2519 1 12 52179711 52160544
BC050454 Gold_excellent 9 2268 1 2268 3 1 1190573 1176717
BC050653 Gold_excellent 7 1921 1 1921 4 3 49425733 49419392
BC050738 Gold_excellent 9 1552 1 1552 3 7 98647997 98666391
BC051310 Gold_excellent 6 1079 1 1079 1 12 92274401 92296080
BC052289 Gold_excellent 12 2782 1 2782 10 7 129485996 129517016
BC052981 Gold_excellent 3 2582 1 2582 3 6 26332477 26335678
BC053672 Gold_excellent 5 2241 1 2241 1 19 53017025 53038392
BC053688 Gold_excellent 13 3481 1 3481 4 1 158256248 158233531
BC054000 Gold_excellent 14 3510 1 3510 0 X 151753245 151743864
BC054004 Gold_excellent 13 3652 1 3652 7 17 75874715 76093797
BC054509 Gold_excellent 7 4208 1 4208 7 15 82618542 82587832
BC056261 Gold_excellent 4 1393 2 1392 5 11 18620206 18592260