| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AB018286 | Gold_excellent | 17 | 4128 | 1 | 4128 | 3 | 14 | 76860134 | 78318820 |
| AB028993 | Gold_excellent | 6 | 4960 | 1 | 4960 | 4 | 3 | 174623390 | 175321826 |
| AK001877 | Gold_excellent | 2 | 2204 | 1 | 2204 | 7 | 19 | 57809730 | 57807443 |
| AK022947 | Gold_excellent | 2 | 1990 | 1 | 1998 | 1 | 20 | 387552 | 389562 |
| AK056175 | Gold_excellent | 16 | 2478 | 1 | 2478 | 1 | 3 | 133074667 | 132574493 |
| AK056530 | Gold_excellent | 6 | 3356 | 1 | 3356 | 0 | 14 | 77735723 | 78318855 |
| AK057278 | Gold_excellent | 16 | 2300 | 1 | 2300 | 6 | 3 | 2908921 | 3073039 |
| AK074522 | Gold_excellent | 3 | 1784 | 1 | 1784 | 1 | 3 | 175317640 | 175321826 |
| AK093413 | Gold_excellent | 4 | 1913 | 1 | 1913 | 3 | Y | 8878075 | 8962073 |
| AK093436 | Gold_excellent | 16 | 1756 | 1 | 1756 | 3 | 10 | 53151139 | 53398540 |
| AK095729 | Gold_excellent | 16 | 2638 | 1 | 2638 | 4 | 3 | 2528273 | 3054360 |
| AK096247 | Gold_excellent | 1 | 1309 | 1 | 1309 | 0 | 14 | 78317491 | 78318799 |
| AK097220 | Gold_excellent | 2 | 3550 | 1 | 3547 | 9 | 19 | 18234201 | 18230618 |
| AK097615 | Gold_excellent | 3 | 1846 | 1 | 1846 | 3 | 13 | 55513053 | 55516074 |
| AK097615 | Gold_excellent | 3 | 1846 | 1 | 1846 | 3 | 13 | 55519623 | 55522644 |
| AK097615 | Gold_excellent | 3 | 1846 | 1 | 1846 | 3 | 13 | 55526196 | 55529218 |
| AK097615 | Gold_excellent | 3 | 1846 | 1 | 1846 | 3 | 13 | 55532767 | 55535789 |
| AK097615 | Gold_excellent | 3 | 1846 | 1 | 1846 | 3 | 13 | 55539332 | 55542354 |
| AK097633 | Gold_excellent | 19 | 2846 | 1 | 2846 | 8 | 3 | 2883102 | 3073039 |
| AK097990 | Gold_excellent | 9 | 2070 | 1 | 2070 | 0 | 3 | 18461313 | 17176886 |
| AK125460 | Gold_excellent | 21 | 3057 | 1 | 3057 | 3 | 3 | 2115550 | 3059679 |
| AK126795 | Gold_excellent | 1 | 3881 | 1 | 3881 | 6 | 14 | 78320690 | 78324571 |
| AK127244 | Gold_excellent | 11 | 3938 | 1 | 3938 | 10 | 2 | 51234273 | 52609589 |
| AK128117 | Gold_excellent | 20 | 4277 | 1 | 4277 | 6 | 3 | 133325163 | 132574472 |
| AK129874 | Gold_excellent | 1 | 2107 | 1 | 2107 | 1 | 3 | 175323239 | 175325345 |
| AK130968 | Gold_excellent | 1 | 564 | 3 | 562 | 1 | 7 | 19786664 | 19787225 |
| AK130968 | Gold_excellent | 1 | 564 | 3 | 562 | 1 | 10 | 121779322 | 121778762 |
| AK130968 | Gold_excellent | 6 | 564 | 3 | 562 | 1 | 13 | 25623695 | 25628700 |
| AL050141 | Gold_excellent | 8 | 2353 | 1 | 2353 | 8 | 1 | 143100548 | 143116447 |
| AL833739 | Gold_excellent | 6 | 4000 | 1 | 4000 | 3 | 14 | 77736428 | 78320799 |
| BC001603 | Gold_excellent | 1 | 546 | 1 | 546 | 0 | 10 | 121779307 | 121778762 |
| BC001603 | Gold_excellent | 6 | 546 | 1 | 546 | 0 | 13 | 25623710 | 25628701 |
| BC005076 | Gold_excellent | 1 | 492 | 14 | 492 | 0 | 6 | 74307293 | 74307785 |
| BC007124 | Gold_excellent | 3 | 989 | 1 | 988 | 1 | 1 | 26405282 | 26407150 |
| BC007505 | Gold_excellent | 1 | 527 | 1 | 527 | 0 | 10 | 121779288 | 121778762 |
| BC007505 | Gold_excellent | 5 | 527 | 1 | 527 | 0 | 13 | 25625908 | 25628701 |
| BC010467 | Gold_excellent | 1 | 820 | 1 | 818 | 1 | 12 | 47595982 | 47595165 |
| BC012127 | Gold_excellent | 1 | 1292 | 1 | 1292 | 0 | 6 | 24925894 | 24924603 |
| BC012615 | Gold_excellent | 2 | 1458 | 4 | 1457 | 1 | 16 | 82440329 | 82673008 |
| BC013215 | Gold_excellent | 3 | 398 | 1 | 398 | 0 | 12 | 54722498 | 54724281 |
| BC013797 | Gold_excellent | 7 | 965 | 1 | 965 | 2 | 3 | 2836188 | 2942448 |
| BC014396 | Gold_excellent | 16 | 2564 | 1 | 2564 | 1 | 3 | 133074753 | 132574493 |
| BC015832 | Gold_excellent | 1 | 430 | 5 | 426 | 0 | 4 | 114594391 | 114593963 |
| BC015832 | Gold_excellent | 4 | 430 | 5 | 426 | 0 | 12 | 54722196 | 54724261 |
| BC019002 | Gold_excellent | 1 | 489 | 1 | 489 | 0 | 10 | 121779280 | 121778792 |
| BC019002 | Gold_excellent | 5 | 489 | 1 | 489 | 0 | 13 | 25625916 | 25628671 |
| BC020307 | Gold_excellent | 1 | 791 | 1 | 791 | 2 | 1 | 26406360 | 26407149 |
| BC026119 | Gold_excellent | 16 | 2297 | 6 | 2297 | 5 | 3 | 2908921 | 3073039 |
| BC028185 | Gold_excellent | 1 | 1004 | 12 | 1004 | 0 | 1 | 104913 | 105917 |
| BC028613 | Gold_excellent | 2 | 2292 | 6 | 2295 | 4 | 3 | 132582846 | 132573324 |
| BC028624 | Gold_excellent | 14 | 3802 | 1 | 3802 | 7 | 16 | 82440292 | 83609889 |
| BC030219 | Gold_excellent | 11 | 2484 | 1 | 2484 | 3 | 14 | 66276579 | 67052655 |
| BC030653 | Gold_excellent | 14 | 3802 | 1 | 3802 | 7 | 16 | 82440292 | 83609889 |
| BC031628 | Gold_excellent | 5 | 518 | 1 | 518 | 1 | X | 48243004 | 48250324 |
| BC031628 | Gold_excellent | 5 | 518 | 1 | 518 | 1 | X | 48252562 | 48259874 |
| BC032555 | Gold_excellent | 7 | 3216 | 12 | 3213 | 1 | 3 | 174437157 | 175320331 |
| BC033526 | Gold_excellent | 1 | 38 | 1 | 38 | 0 | 5 | 69251771 | 69251808 |
| BC033526 | Gold_excellent | 1 | 38 | 1 | 38 | 0 | 5 | 69272224 | 69272262 |
| BC033526 | Gold_excellent | 1 | 38 | 1 | 38 | 0 | 5 | 69524589 | 69524552 |
| BC033526 | Gold_excellent | 1 | 38 | 1 | 38 | 0 | 5 | 69545870 | 69545833 |
| BC033526 | Gold_excellent | 1 | 38 | 1 | 38 | 0 | 5 | 70009984 | 70010022 |
| BC033526 | Gold_excellent | 1 | 38 | 1 | 38 | 0 | 5 | 70276815 | 70276778 |
| BC034980 | Gold_excellent | 2 | 2039 | 6 | 2034 | 0 | 19 | 48808093 | 48810486 |
| BC036613 | Gold_excellent | 1 | 1141 | 1 | 1140 | 0 | 7 | 89542664 | 89541525 |
| BC037793 | Gold_excellent | 2 | 1551 | 1 | 1551 | 1 | 12 | 122810930 | 122813014 |
| BC046346 | Gold_excellent | 1 | 703 | 1 | 703 | 2 | 22 | 22522322 | 22523024 |
| BC046346 | Gold_excellent | 1 | 703 | 3 | 701 | 1 | 7 | 930171 | 929471 |
| BC048263 | Gold_excellent | 2 | 1844 | 1 | 1844 | 3 | 17 | 43480806 | 43477244 |
| BC059368 | Gold_excellent | 6 | 2629 | 1 | 2629 | 0 | 14 | 77735797 | 78318821 |
| BC061898 | Gold_excellent | 2 | 919 | 1 | 919 | 1 | 1 | 26405780 | 26407143 |
| BC062462 | Gold_excellent | 4 | 402 | 1 | 402 | 0 | 12 | 54796698 | 54797874 |
| BC062688 | Gold_excellent | 7 | 1188 | 3 | 1185 | 1 | 10 | 52178929 | 53167219 |
| BC062981 | Gold_excellent | 1 | 544 | 1 | 544 | 0 | 10 | 121779305 | 121778743 |
| BC062981 | Gold_excellent | 6 | 544 | 1 | 544 | 0 | 13 | 25623712 | 25628705 |
| BC064347 | Gold_excellent | 3 | 967 | 1 | 967 | 1 | 1 | 26405302 | 26407150 |
| BC064907 | Gold_excellent | 4 | 411 | 1 | 411 | 0 | 12 | 54796698 | 54797883 |
| BX537831 | Gold_excellent | 1 | 3996 | 1 | 3996 | 7 | 3 | 175321346 | 175325341 |
| BX647669 | Gold_excellent | 7 | 534 | 3 | 532 | 0 | 13 | 25623695 | 25628701 |
| D86965 | Gold_excellent | 22 | 6611 | 1 | 6611 | 6 | 3 | 17757403 | 17174903 |