Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK000375 Gold_excellent 12 2151 1 2151 4 20 13760532 13694628
AK000375 NCBI 34.3 11 2151 1 2150 4 20 13760532 13704022
AK001094 Gold_excellent 3 1636 4 1628 5 9 126104783 125982185
AK001094 NCBI 34.3 3 1636 4 1651 33 9 126104783 126064765
AK001137 Gold_excellent 17 1805 1 1805 1 10 27393427 27341911
AK001137 NCBI 34.3 16 1805 1 1803 1 10 27393427 27346253
AK001739 Gold_excellent 28 3612 1 3612 2 2 233764580 233925857
AK001739 NCBI 34.3 27 3612 1 3606 4 2 233764580 233911812
AK001870 Gold_excellent 8 1258 2 1257 1 14 22413107 22465738
AK001870 NCBI 34.3 8 1258 2 1257 4 14 22413107 22428609
AK022655 Gold_excellent 11 2160 1 2160 7 3 155191622 155295250
AK022655 NCBI 34.3 13 2160 1 2149 35 3 155191622 155394031
AK024740 Gold_excellent 10 810 1 810 3 6 111348812 111392177
AK024740 NCBI 34.3 9 810 1 808 3 6 111348812 111391100
AK025054 Gold_excellent 2 1629 1 1626 6 2 198297843 198099681
AK025054 NCBI 34.3 2 1629 1 1627 10 2 198297843 198292635
AK025172 Gold_excellent 2 1846 1 1846 1 17 44972029 45190495
AK025172 NCBI 34.3 7 1846 1 1841 58 17 44972029 45029856
AK026421 Gold_excellent 5 3008 1 3008 12 9 701011 724752
AK026421 NCBI 34.3 4 3008 1 3008 13 9 701011 722622
AK027626 Gold_excellent 9 2239 1 2239 1 16 77913079 79026090
AK027626 NCBI 34.3 8 2239 1 1180 1 16 77913079 78246176
AK054646 Gold_excellent 8 1945 5 1941 2 2 193262978 193023637
AK054646 NCBI 34.3 8 1945 5 1941 5 2 193262978 193051803
AK055118 Gold_excellent 2 2412 1 2411 9 11 124825007 124928048
AK055118 NCBI 34.3 2 2412 1 2412 12 11 124825007 124836758
AK056528 Gold_excellent 19 3313 1 3313 2 2 124878009 125768057
AK056528 NCBI 34.3 19 3313 1 3241 3 2 124878009 125682741
AK056661 Gold_excellent 42 3731 1 3731 6 3 185850872 186091305
AK056661 NCBI 34.3 43 3731 1 3731 14 3 185850872 186045388
AK057141 Gold_excellent 20 3316 1 3316 5 18 52467579 52696180
AK057141 NCBI 34.3 20 3316 1 3314 10 18 52467579 52661963
AK057892 Gold_excellent 3 2094 1 2092 2 1 46038923 46107243
AK057892 NCBI 34.3 3 2094 1 2094 5 1 46038923 46062526
AK057965 Gold_excellent 16 2068 1 2067 3 2 206180800 206855653
AK057965 NCBI 34.3 13 2068 1 1995 0 2 206180800 206368968
AK074629 Gold_excellent 5 1608 4 1601 0 9 111548707 111349514
AK074629 NCBI 34.3 6 1608 2 1603 3 9 111548709 111521157
AK091140 Gold_excellent 27 3153 1 3153 2 2 122502158 122192239
AK091140 NCBI 34.3 27 3153 61 3038 4 2 122493906 122254296
AK091577 Gold_excellent 13 2716 1 2716 5 12 970690 1216251
AK091577 NCBI 34.3 12 2716 1 2660 4 12 970690 1183939
AK091757 Gold_excellent 6 1993 1 1993 3 1 78117876 78182167
AK091757 NCBI 34.3 3 1993 1 1343 3 1 78117876 78140155
AK092024 Gold_excellent 18 2239 1 2239 2 13 58536042 58296982
AK092024 NCBI 34.3 17 2239 1 2215 2 13 58536042 58342079
AK092767 Gold_excellent 15 2338 1 2338 2 7 5565614 5425341
AK092767 NCBI 34.3 14 2338 1 2333 2 7 5565614 5436382
AK093413 Gold_excellent 4 1913 1 1913 3 Y 8878075 8962073
AK093413 NCBI 34.3 4 1913 1 1913 4 Y 8878075 8880849
AK093991 Gold_excellent 18 2303 5 2299 2 7 89486538 89548248
AK093991 NCBI 34.3 17 2303 3 2298 4 7 89486536 89546165
AK094835 Gold_excellent 6 2476 1 2476 2 8 7170092 7121628
AK094835 NCBI 34.3 6 2476 1 2476 16 8 7170092 7129250
AK095030 Gold_excellent 7 3509 1 3509 14 1 142573798 143078699
AK095030 NCBI 34.3 6 3509 1 3509 26 1 142573798 142580687
AK095545 Gold_excellent 2 2545 1 2542 6 3 86039694 86069594
AK095545 NCBI 34.3 1 2545 1 2542 10 3 86039694 86042235
AK095828 Gold_excellent 4 2519 1 2516 9 7 86427341 86551999
AK095828 NCBI 34.3 5 2519 1 2519 17 7 86427341 86463193
AK096614 Gold_excellent 4 2461 1 2461 6 1 1673933 1585827
AK096614 NCBI 34.3 4 2461 1 2461 8 1 1673933 1634576
AK122612 Gold_excellent 4 2247 1 2247 4 2 77724031 76950221
AK122612 NCBI 34.3 3 2247 1 1888 3 2 77724031 77719981
AK124453 Gold_excellent 12 1851 1 1851 4 12 98880646 98143077
AK124453 NCBI 34.3 13 1851 1 1851 19 12 98880646 98277364
AK125889 Gold_excellent 3 3504 1 3500 9 2 219606622 219458909
AK125889 NCBI 34.3 2 3504 1 3504 19 2 219606622 219574078
AK125954 Gold_excellent 4 4652 1 4628 13 17 20610713 20989553
AK125954 NCBI 34.3 1 4652 1 4593 15 17 20610713 20615305
AK126878 Gold_excellent 26 3960 1 3960 7 3 214327 418310
AK126878 NCBI 34.3 25 3960 1 3960 8 3 214327 415833
AK126987 Gold_excellent 13 3872 1 3872 8 X 99512277 99560303
AK126987 NCBI 34.3 12 3872 1 3126 9 X 99512277 99556162
AK127063 Gold_excellent 7 3543 1 3543 6 19 45253952 45230822
AK127063 NCBI 34.3 7 3543 1 3543 9 19 45253952 45231040
AK129531 Gold_excellent 12 1937 1 1937 7 2 179840432 179395769
AK129531 NCBI 34.3 10 1937 1 1937 26 2 179840432 179804577
AL050141 Gold_excellent 8 2353 1 2353 8 1 143100548 143116447
AL050141 NCBI 34.3 7 2353 1 2353 37 1 143095818 143102307
AL080197 Gold_excellent 2 924 1 924 2 22 22299042 21926275
AL080197 NCBI 34.3 2 924 1 924 3 22 22299042 22293818
AL136793 Gold_excellent 16 3517 2 3516 12 9 43856892 43970328
AL136793 NCBI 34.3 15 3517 2 3516 17 9 43856892 43900011
AL831884 Gold_excellent 2 4088 1 4088 8 11 111011262 111030307
AL831884 NCBI 34.3 1 4088 1 4088 12 11 111011262 111015354
AL832594 Gold_excellent 2 4082 12 4082 16 3 43082487 43174488
AL832594 NCBI 34.3 1 4082 4 4090 23 3 43082481 43086564
AL833089 Gold_excellent 17 4954 38 4954 12 15 28999841 28918852
AL833089 NCBI 34.3 16 4954 53 4939 15 15 28999841 28947205
AL834522 Gold_excellent 22 2886 1 2885 0 9 73963149 74296468
AL834522 NCBI 34.3 21 2886 1 2877 0 9 73963149 74265454
BC000675 Gold_excellent 15 1643 1 1643 2 1 1160781 1153036
BC000675 NCBI 34.3 14 1643 1 1600 2 1 1160781 1153119
BC001213 Gold_excellent 7 824 1 824 0 17 2621742 2526971
BC001213 NCBI 34.3 7 824 1 819 11 17 2621742 2564999
BC002590 Gold_excellent 9 1207 1 1207 0 21 33617695 33645461
BC002590 NCBI 34.3 8 1207 1 1205 0 21 33617695 33642245
BC003019 Gold_excellent 8 1240 1 1240 0 14 22413124 22465738
BC003019 NCBI 34.3 8 1240 1 1240 3 14 22413124 22428611
BC005191 Gold_excellent 3 271 3 269 0 10 92345420 92343600
BC005191 NCBI 34.3 2 271 3 268 1 10 92345420 92344501
BC005199 Gold_excellent 4 325 1 325 0 3 14668273 14675383
BC005199 NCBI 34.3 3 325 1 324 0 3 14668273 14672141
BC006217 Gold_excellent 3 1164 1 1164 0 7 100368851 100000388
BC006217 NCBI 34.3 2 1164 1 1164 6 7 100368851 100367177
BC008204 Gold_excellent 9 934 1 934 0 20 35045523 35025227
BC008204 NCBI 34.3 8 934 1 933 0 20 35045523 35027920
BC009840 Gold_excellent 7 841 1 841 0 1 70057118 70075042
BC009840 NCBI 34.3 6 841 1 840 1 1 70057118 70073155
BC012052 Gold_excellent 23 1814 1 1814 0 2 118866798 118783868
BC012052 NCBI 34.3 22 1814 1 1812 1 2 118866798 118788214
BC012159 Gold_excellent 2 877 1 877 1 22 21554573 21573522
BC012159 NCBI 34.3 2 877 1 877 2 22 21554573 21568167
BC012542 Gold_excellent 8 1833 4 1829 4 20 25383321 25582017
BC012542 NCBI 34.3 8 1833 4 1829 6 20 25383321 25423765
BC013154 Gold_excellent 13 1694 1 1694 3 14 62000113 61832864
BC013154 NCBI 34.3 12 1694 1 1690 3 14 62000113 61838815
BC013707 Gold_excellent 5 1622 1 1622 2 14 56595635 56468895
BC013707 NCBI 34.3 5 1622 1 1617 3 14 56595635 56546689
BC016066 Gold_excellent 15 1317 1 1317 0 5 96071980 96156120
BC016066 NCBI 34.3 14 1317 1 1316 0 5 96071980 96152534
BC017987 Gold_excellent 5 1108 1 1108 1 3 101154250 100890776
BC017987 NCBI 34.3 4 1108 1 1068 1 3 101154250 100963975
BC020376 Gold_excellent 8 1546 24 1546 3 17 74424506 74270953
BC020376 NCBI 34.3 7 1546 57 1513 5 17 74424506 74420436
BC022815 Gold_excellent 8 844 1 844 0 1 70041281 70075042
BC022815 NCBI 34.3 7 844 1 843 1 1 70041281 70073155
BC025660 Gold_excellent 2 1552 1 1552 0 10 104701338 104623077
BC025660 NCBI 34.3 7 1552 1 1244 109 10 104701338 104660559
BC029393 Gold_excellent 12 1174 1 1180 3 6 123938671 123739830
BC029393 NCBI 34.3 10 1174 1 1106 1 6 123938671 123766627
BC030584 Gold_excellent 9 2896 6 2896 1 13 89748893 91217486
BC030584 NCBI 34.3 8 2896 1 1950 8 13 89748780 90495243
BC031321 Gold_excellent 5 831 2 830 2 1 81194434 81623607
BC031321 NCBI 34.3 6 831 2 830 3 1 81194434 81622851
BC032011 Gold_excellent 2 1805 1 1803 5 2 203628059 203666839
BC032011 NCBI 34.3 1 1805 1 1783 0 2 203628059 203629841
BC032236 Gold_excellent 13 3788 1 3788 7 X 99512319 99560303
BC032236 NCBI 34.3 12 3788 1 3042 8 X 99512319 99556162
BC032471 Gold_excellent 3 1727 1 1721 2 9 37069994 37104037
BC032471 NCBI 34.3 2 1727 1 1727 8 9 37069994 37077846
BC032518 Gold_excellent 12 2051 11 2049 1 4 78536773 78812935
BC032518 NCBI 34.3 10 2051 11 1675 1 4 78536773 78571815
BC032727 Gold_excellent 8 823 9 823 1 1 70041302 70075042
BC032727 NCBI 34.3 7 823 9 822 2 1 70041302 70073155
BC033215 Gold_excellent 6 1055 1 1065 0 5 65908092 66298234
BC033215 NCBI 34.3 3 1055 1 918 0 5 65908092 66100506
BC033624 Gold_excellent 3 1727 1 1721 2 9 37069994 37104037
BC033624 NCBI 34.3 2 1727 1 1727 8 9 37069994 37077846
BC034477 Gold_excellent 13 2096 1 2096 0 8 23337146 23265235
BC034477 NCBI 34.3 12 2096 1 1834 0 8 23337146 23313768
BC036351 Gold_excellent 20 2632 1 2613 2 7 89486554 89546096
BC036351 NCBI 34.3 20 2632 1 2632 12 7 89486554 89572117
BC038110 Gold_excellent 19 3565 1 3565 2 14 36070495 36500685
BC038110 NCBI 34.3 18 3565 1 3381 1 14 36070495 36427832
BC039730 Gold_excellent 9 2902 1 2902 0 13 89748888 91217486
BC039730 NCBI 34.3 7 2902 3 1949 8 13 89748916 90495243
BC040127 Gold_excellent 7 1163 1 1163 0 1 108581557 108588684
BC040127 NCBI 34.3 6 1163 1 1163 4 1 108581557 108588510
BC040734 Gold_excellent 2 1552 1 1552 1 10 104701338 104623077
BC040734 NCBI 34.3 7 1552 1 1244 109 10 104701338 104660559
BC044213 Gold_excellent 13 2580 1 2566 2 13 71101182 71427375
BC044213 NCBI 34.3 11 2580 1 2543 6 13 71101182 71128325
BC047887 Gold_excellent 9 2271 1 2271 1 6 136591528 136571315
BC047887 NCBI 34.3 8 2271 1 2268 2 6 136591528 136573700
BC050405 Gold_excellent 4 1457 11 1459 5 7 101872627 101750852
BC050405 NCBI 34.3 5 1457 11 1456 21 7 101872627 101844350
BC050555 Gold_excellent 26 2723 1 2723 0 14 54037027 54109611
BC050555 NCBI 34.3 25 2723 1 2722 1 14 54037027 54108688
BC051801 Gold_excellent 16 2078 1 2078 1 9 126690927 126771983
BC051801 NCBI 34.3 15 2078 1 2002 0 9 126690927 126721499
BC054339 Gold_excellent 3 634 1 634 0 7 122080994 121858046
BC054339 NCBI 34.3 2 634 1 553 0 7 122080994 121931512
BC056667 Gold_excellent 9 1087 2 1086 2 1 93118079 93144469
BC056667 NCBI 34.3 8 1087 2 1084 3 1 93118079 93142992
BC057222 Gold_excellent 11 1166 5 1166 2 6 123938671 123740665
BC057222 NCBI 34.3 10 1166 3 1108 3 6 123938673 123766627
BC063117 Gold_excellent 20 2024 4 2024 0 11 119745270 119857478
BC063117 NCBI 34.3 19 2024 1 2027 4 11 119745267 119856721
BC064358 Gold_excellent 14 1878 1 1878 0 14 62000100 61832864
BC064358 NCBI 34.3 13 1878 1 1874 0 14 62000100 61838815
BC064526 Gold_excellent 2 1361 1 1361 1 10 102337323 102389477
BC064526 NCBI 34.3 1 1361 1 1333 1 10 102337323 102338655
BX537422 Gold_excellent 4 5817 4 5814 10 13 65602464 64675266
BX537422 NCBI 34.3 2 5817 4 3723 6 13 65602464 65597538
BX538331 Gold_excellent 14 3514 2 3504 3 2 63790146 63430057
BX538331 NCBI 34.3 12 3514 2 1956 1 2 63790146 63580054