Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AB002310 Gold_excellent 54 10790 1 10790 2 X 52588257 52525850
AB002310 NCBI 34.3 54 10790 1 10790 2 X 52602278 52525850
AK000962 Gold_excellent 11 1451 1 1451 3 X 46050631 46092193
AK000962 NCBI 34.3 10 1451 1 1451 29 X 46050631 46092193
AK001141 Gold_excellent 10 1394 1 1394 2 16 50028020 50041456
AK001141 NCBI 34.3 9 1394 1 1394 4 16 50028020 50041455
AK001358 Gold_excellent 10 1929 1 1929 3 3 49015022 49011936
AK001358 NCBI 34.3 9 1929 1 1929 6 3 49015022 49011936
AK002153 Gold_excellent 15 1768 1 1768 3 2 184031961 183992847
AK002153 NCBI 34.3 15 1768 1 1768 11 2 184035958 183992847
AK023390 Gold_excellent 12 1727 5 1723 3 4 185310001 185330122
AK023390 NCBI 34.3 11 1727 2 1726 9 4 185309998 185330121
AK025878 Gold_excellent 13 1936 1 1936 0 12 54817958 54824724
AK025878 NCBI 34.3 13 1936 1 1936 0 12 54812845 54824725
AK027414 Gold_excellent 29 3309 1 3309 8 16 56852907 56892828
AK027414 NCBI 34.3 29 3309 1 3309 8 16 56846587 56892828
AK027654 Gold_excellent 9 2306 2 2305 4 5 115893649 115858046
AK027654 NCBI 34.3 8 2306 2 2305 8 5 115894365 115858046
AK027901 Gold_excellent 8 2340 1 2340 3 19 38979603 38996920
AK027901 NCBI 34.3 7 2340 1 2340 7 19 38979603 38996919
AK055263 Gold_excellent 7 2183 2 2182 6 8 144872638 144883531
AK055263 NCBI 34.3 6 2183 2 2182 31 8 144872638 144883531
AK055905 Gold_excellent 22 3327 1 3327 3 1 62373486 62290601
AK055905 NCBI 34.3 22 3327 1 3327 3 1 62395809 62290601
AK056699 Gold_excellent 13 2173 1 2173 2 6 112160654 112028138
AK056699 NCBI 34.3 12 2173 1 2173 4 6 112160654 112028138
AK057466 Gold_excellent 5 1812 2 1811 5 19 18246167 18228907
AK057466 NCBI 34.3 5 1812 1 1812 8 19 18246226 18228907
AK058170 Gold_excellent 14 1560 1 1560 0 17 67854394 67840612
AK058170 NCBI 34.3 14 1560 1 1560 0 17 67867162 67840612
AK075030 Gold_excellent 5 1727 23 1726 0 19 4635689 4626366
AK075030 NCBI 34.3 6 1727 1 1748 5 19 4666054 4626366
AK090442 Gold_excellent 2 5592 1 5592 22 X|NT_078109 113169 125580
AK090442 NCBI 34.3 2 5592 1 5592 22 X|NT_078109 84821 125580
AK090671 Gold_excellent 16 2267 1 2267 0 2 96456040 96425226
AK090671 NCBI 34.3 16 2267 1 2267 3 2 96456040 96425226
AK091394 Gold_excellent 15 2327 1 2327 2 14 89570824 89681737
AK091394 NCBI 34.3 15 2327 1 2327 20 14 89570824 89681737
AK091779 Gold_excellent 3 2400 1 2400 5 4 1185034 1179431
AK091779 NCBI 34.3 2 2400 1 2400 8 4 1185034 1179431
AK091840 Gold_excellent 10 2123 1 2123 5 11 129722071 129810786
AK091840 NCBI 34.3 9 2123 1 2123 29 11 129722071 129810785
AK092286 Gold_excellent 11 2385 1 2385 1 8 19807037 19833905
AK092286 NCBI 34.3 11 2385 1 2385 14 8 19807037 19833905
AK092334 Gold_excellent 4 3600 1 3600 14 21 46469847 46465248
AK092334 NCBI 34.3 3 3600 1 3600 17 21 46469847 46465248
AK092788 Gold_excellent 15 2782 3 2787 2 12 52407502 52391170
AK092788 NCBI 34.3 15 2782 1 2789 7 12 52407504 52391170
AK092861 Gold_excellent 14 2444 1 2444 0 8 145361368 145422809
AK092861 NCBI 34.3 13 2444 1 2444 3 8 145361368 145422809
AK093707 Gold_excellent 3 1883 1 1883 6 1 151403173 151400624
AK093707 NCBI 34.3 2 1883 1 1883 9 1 151403173 151400624
AK094105 Gold_excellent 9 1945 1 1945 6 1 218016546 218044020
AK094105 NCBI 34.3 9 1945 1 1945 12 1 218016546 218044020
AK094263 Gold_excellent 3 1542 19 1548 4 7 75395987 75520666
AK094263 NCBI 34.3 2 1542 1 1566 15 7 75510945 75520665
AK095290 Gold_excellent 19 2865 2 2864 1 3 150260523 150212285
AK095290 NCBI 34.3 18 2865 2 2864 5 3 150260523 150212285
AK095974 Gold_excellent 7 2192 1 2192 1 7 45701651 45692738
AK095974 NCBI 34.3 6 2192 1 2192 37 7 45701651 45692738
AK096199 Gold_excellent 8 2392 7 2395 3 2 211069912 211088839
AK096199 NCBI 34.3 8 2392 3 2399 9 2 211069908 211088838
AK096409 Gold_excellent 10 2822 1 2822 6 10 73320076 73200883
AK096409 NCBI 34.3 9 2822 1 2822 13 10 73320076 73200883
AK096945 Gold_excellent 4 2181 1 2181 1 15 61605407 61609251
AK096945 NCBI 34.3 4 2181 1 2181 18 15 61605407 61609251
AK097091 Gold_excellent 10 2027 1 2027 1 5 69332748 69233558
AK097091 NCBI 34.3 9 2027 1 2027 11 5 69332748 69233558
AK097238 Gold_excellent 25 3358 1 3358 3 16 4466883 4407669
AK097238 NCBI 34.3 24 3358 1 3358 5 16 4466883 4407669
AK097400 Gold_excellent 3 1651 1 1651 3 17 7524208 7528118
AK097400 NCBI 34.3 2 1651 1 1651 8 17 7524208 7528118
AK098253 Gold_excellent 5 3108 34 3105 7 X 13101754 13079517
AK098253 NCBI 34.3 4 3108 1 3138 14 X 13101785 13079517
AK098504 Gold_excellent 14 3321 1 3321 7 11 12363382 12515893
AK098504 NCBI 34.3 13 3321 1 3321 41 11 12363382 12515893
AK098768 Gold_excellent 12 2188 1 2188 1 X 19444282 19386653
AK098768 NCBI 34.3 12 2188 1 2188 9 X 19444282 19386653
AK122677 Gold_excellent 9 2417 1 2416 5 16 77134509 77096350
AK122677 NCBI 34.3 9 2417 1 2416 5 16 77141323 77096350
AK123475 Gold_excellent 4 1951 1 1951 4 2 19211238 19152241
AK123475 NCBI 34.3 4 1951 1 1951 4 2 19211238 19152241
AK123626 Gold_excellent 31 2811 1 2811 7 2 96058003 96006512
AK123626 NCBI 34.3 31 2811 1 2811 7 2 96058003 96006512
AK125217 Gold_excellent 7 2364 1 2362 7 3 197016067 197013149
AK125217 NCBI 34.3 2 2364 1 2364 58 3 197016067 197013149
AK125646 Gold_excellent 4 3479 1 3479 9 7 38121996 38159018
AK125646 NCBI 34.3 4 3479 1 3479 14 7 38121996 38159018
AK125676 Gold_excellent 7 2400 1 2400 8 12 13044631 13084880
AK125676 NCBI 34.3 8 2400 1 2400 21 12 13044631 13084880
AK125775 Gold_excellent 6 2082 1 2082 7 4 1232945 1271907
AK125775 NCBI 34.3 6 2082 1 2082 10 4 1193206 1271907
AK126455 Gold_excellent 18 2438 1 2438 4 5 145855396 145911908
AK126455 NCBI 34.3 18 2438 1 2438 22 5 145855396 145911907
AK126530 Gold_excellent 5 4325 1 4325 9 2 243259862 243264663
AK126530 NCBI 34.3 2 4325 1 4325 37 2 243259862 243264662
AK126721 Gold_excellent 18 4268 1 4268 8 15 41720930 41607856
AK126721 NCBI 34.3 17 4268 1 4268 38 15 41720930 41607856
AK126879 Gold_excellent 12 3969 1 3969 7 1 202661912 202679348
AK126879 NCBI 34.3 11 3969 1 3969 12 1 202661912 202679348
AK127593 Gold_excellent 11 2169 1 2169 1 2 27607002 27578600
AK127593 NCBI 34.3 11 2169 1 2169 10 2 27607002 27578600
AK128318 Gold_excellent 3 3259 1 3259 13 8 601619 597192
AK128318 NCBI 34.3 2 3259 1 3259 20 8 601619 597192
AK128384 Gold_excellent 3 2938 6 2943 8 7 141954608 141968564
AK128384 NCBI 34.3 2 2938 4 2945 12 7 141954606 141968563
AK129533 Gold_excellent 9 1554 1 1554 0 7 132183074 131885861
AK129533 NCBI 34.3 9 1554 1 1554 2 7 132183074 131885861
AK129785 Gold_excellent 4 2339 1 2339 4 Y 8895966 8888076
AK129785 Gold_excellent 4 2339 1 2339 4 Y 8956863 8928687
AK129785 NCBI 34.3 4 2339 1 2339 4 Y 8916246 8888076
AK130972 Gold_excellent 5 545 1 545 0 10 28416972 28411796
AK130972 NCBI 34.3 5 545 1 545 0 10 28422801 28411796
AL050094 Gold_excellent 8 1135 12 1124 0 20 2636564 2634043
AL050094 NCBI 34.3 9 1135 1 1135 4 20 2669117 2634041
AL050226 Gold_excellent 6 1603 9 1603 1 3 67512589 67358215
AL050226 NCBI 34.3 7 1603 2 1610 4 3 67542017 67358213
AL096727 Gold_excellent 3 1681 2 1680 0 20 25838837 25749655
AL096727 NCBI 34.3 4 1681 2 1680 4 20 25838837 25749654
AL110210 Gold_excellent 8 3227 4 3227 5 3 47411642 47415523
AL110210 NCBI 34.3 8 3227 2 3229 7 3 47406165 47415523
AL136873 Gold_excellent 4 1820 1 1820 1 15 70764425 70759527
AL136873 NCBI 34.3 4 1820 1 1820 1 15 70766239 70759525
AL162072 Gold_excellent 7 1163 13 1163 0 11 66984171 66980886
AL162072 NCBI 34.3 7 1163 1 1175 5 11 67005626 66980882
AL390127 Gold_excellent 2 5544 14 5542 13 15 29366315 29386156
AL390127 NCBI 34.3 2 5544 2 5554 19 15 29344271 29386156
AL831830 Gold_excellent 8 2208 1 2208 0 17 29996180 30005623
AL831830 NCBI 34.3 8 2208 1 2208 0 17 29965157 30005624
AL832369 Gold_excellent 4 4796 1 4796 6 8 64131924 64175304
AL832369 NCBI 34.3 4 4796 1 4796 7 8 64123724 64175307
AL832394 Gold_excellent 9 2791 1 2791 1 12 110898054 110877542
AL832394 NCBI 34.3 9 2791 1 2791 1 12 110924244 110877540
AL832977 Gold_excellent 53 2913 1 2913 6 2 96077733 96010436
AL832977 NCBI 34.3 51 2913 1 2913 125 2 96077733 96010436
AL833676 Gold_excellent 14 4113 1 4113 3 10 93265033 93289610
AL833676 NCBI 34.3 14 4113 1 4113 3 10 93244360 93289610
AL834445 Gold_excellent 6 3279 1 3279 2 20 23365854 23350164
AL834445 NCBI 34.3 6 3279 1 3279 3 20 23399185 23350159
BC002605 Gold_excellent 19 1950 1 1950 0 12 111641764 111744379
BC002605 NCBI 34.3 19 1950 1 1950 0 12 111625538 111744382
BC004300 Gold_excellent 22 2816 1 2816 1 3 37992913 38009300
BC004300 NCBI 34.3 22 2816 1 2816 11 3 37992913 38009301
BC004907 Gold_excellent 13 2139 1 2139 0 19 60275200 60291100
BC004907 NCBI 34.3 12 2139 1 2139 2 19 60275200 60291100
BC005105 Gold_excellent 2 1072 1 1072 2 16 89784972 89778381
BC005105 NCBI 34.3 2 1072 1 1072 6 16 89799299 89778380
BC007772 Gold_excellent 7 1485 1 1485 1 3 195668630 195627920
BC007772 NCBI 34.3 6 1485 1 1485 4 3 195668630 195627918
BC008324 Gold_excellent 4 2417 1 2417 1 3 142091163 142188361
BC008324 NCBI 34.3 4 2417 1 2417 4 3 142055792 142188362
BC009993 Gold_excellent 8 1710 1 1710 2 3 130318724 130345054
BC009993 NCBI 34.3 8 1710 2 1709 5 3 130297528 130345055
BC010573 Gold_excellent 12 2808 1 2808 6 1 32362494 32333186
BC010573 NCBI 34.3 11 2808 1 2808 8 1 32362494 32333184
BC011416 Gold_excellent 16 2213 1 2213 1 2 70914802 70865164
BC011416 NCBI 34.3 15 2213 1 2213 4 2 70914802 70865162
BC011910 Gold_excellent 5 1186 1 1186 0 12 55920742 55914955
BC011910 NCBI 34.3 5 1186 1 1186 0 12 55920812 55914953
BC012465 Gold_excellent 4 3316 1 3316 10 1 243388224 243384004
BC012465 NCBI 34.3 2 3316 1 3316 34 1 243388224 243384001
BC013837 Gold_excellent 6 1071 1 1071 0 16 16341527 16355016
BC013837 Gold_excellent 6 1071 1 1071 0 16 18491231 18477741
BC013837 NCBI 34.3 6 1071 1 1071 0 16 16303662 16355017
BC015690 Gold_excellent 8 1083 9 1075 0 12 119050845 119046463
BC015690 NCBI 34.3 8 1083 1 1083 4 12 119079022 119046458
BC016364 Gold_excellent 7 1572 4 1569 2 2 24155752 24197976
BC016364 NCBI 34.3 7 1572 1 1572 5 2 24139570 24197976
BC016826 Gold_excellent 5 1530 5 1528 4 19 16115544 16130343
BC016826 NCBI 34.3 4 1530 2 1533 27 19 16115541 16130350
BC017059 Gold_excellent 11 2694 1 2694 3 1 156196507 156241730
BC017059 NCBI 34.3 11 2694 1 2694 3 1 156196507 156241733
BC017403 Gold_excellent 6 1087 4 1087 0 6 83943039 83916853
BC017403 NCBI 34.3 6 1087 1 1090 2 6 83946000 83916842
BC018140 Gold_excellent 5 424 1 424 0 20 61647589 61648980
BC018140 NCBI 34.3 5 424 1 424 0 20 61626066 61648981
BC019862 Gold_excellent 2 2050 1 2050 1 5 140204270 140193645
BC019862 NCBI 34.3 2 2050 1 2050 1 5 140231078 140193645
BC025927 Gold_excellent 15 2241 1 2241 0 22 23330380 23349524
BC025927 NCBI 34.3 15 2241 1 2241 0 22 23290631 23349524
BC029054 Gold_excellent 10 1770 7 1764 4 10 102454732 102441709
BC029054 NCBI 34.3 10 1770 1 1770 10 10 102455426 102441708
BC030240 Gold_excellent 13 1906 12 1903 0 1 152413985 152400409
BC030240 NCBI 34.3 13 1906 12 1903 0 1 152431109 152400408
BC031645 Gold_excellent 8 1668 1 1668 2 1 155391010 155444845
BC031645 NCBI 34.3 8 1668 1 1668 6 1 155391010 155444845
BC031694 Gold_excellent 23 3437 1 3437 2 5 61786169 61940287
BC031694 NCBI 34.3 23 3437 1 3437 2 5 61760311 61940288
BC032550 Gold_excellent 21 3473 23 3459 4 1 204753305 204866589
BC032550 NCBI 34.3 21 3473 23 3459 5 1 204753305 204866590
BC034410 Gold_excellent 18 2103 1 2103 0 16 67009891 67014143
BC034410 NCBI 34.3 18 2103 1 2103 0 16 66982700 67014144
BC035969 Gold_excellent 12 1418 1 1418 0 4 74736255 74753222
BC035969 NCBI 34.3 11 1418 1 1418 4 4 74736255 74753224
BC036263 Gold_excellent 10 2170 1 2170 4 16 21403211 21380101
BC036263 Gold_excellent 10 2170 1 2170 4 16 22491437 22514317
BC036263 NCBI 34.3 9 2170 1 2170 6 16 22491437 22514322
BC038558 Gold_excellent 5 1161 1 1161 1 X 129595259 129542302
BC038558 NCBI 34.3 5 1161 1 1161 1 X 129623548 129542301
BC039725 Gold_excellent 7 1600 1 1600 6 7 38143899 38019967
BC039725 NCBI 34.3 7 1600 1 1600 5 7 38143899 38019963
BC041135 Gold_excellent 26 7103 1 7103 3 16 15703320 15654684
BC041135 NCBI 34.3 26 7103 1 7103 3 16 15725440 15654683
BC047480 Gold_excellent 17 3270 3 3268 1 Y 24190343 24120695
BC047480 Gold_excellent 17 3270 3 3268 1 Y 25825250 25909214
BC047480 NCBI 34.3 17 3270 3 3268 1 Y 24190343 24120692
BC047617 Gold_excellent 17 3272 1 3271 2 Y 24190341 24120690
BC047617 Gold_excellent 17 3272 1 3271 2 Y 25825252 25909219
BC047617 NCBI 34.3 17 3272 1 3271 2 Y 24190341 24120690
BC048327 Gold_excellent 12 1833 1 1833 2 10 347799 276881
BC048327 NCBI 34.3 12 1833 1 1833 2 10 348004 276879
BC049824 Gold_excellent 5 457 1 457 0 15 80540659 80536983
BC049824 Gold_excellent 5 457 1 457 0 15 80935002 80931326
BC049824 NCBI 34.3 5 457 1 457 0 15 80973597 80931325
BC051902 Gold_excellent 6 2418 1 2418 4 19 49290385 49304317
BC051902 NCBI 34.3 5 2418 98 2321 50 19 49182914 49304319
BC062327 Gold_excellent 9 1067 1 1067 0 11 104443567 104433956
BC062327 NCBI 34.3 9 1067 1 1067 0 11 104453751 104433952
BC062626 Gold_excellent 9 2935 1 2935 1 1 152413984 152400409
BC062626 NCBI 34.3 9 2935 1 2935 1 1 152431108 152400408
BC063680 Gold_excellent 5 1279 10 1279 2 11 71424453 71434458
BC063680 NCBI 34.3 5 1279 10 1279 4 11 71392183 71434460
BC065021 Gold_excellent 17 1803 2 1802 0 5 69617604 69585354
BC065021 NCBI 34.3 17 1803 2 1802 17 5 69617604 69585353
BX538082 Gold_excellent 4 1721 1 1721 1 2 128496892 128507023
BX538082 NCBI 34.3 3 1721 1 1721 5 2 128496892 128507021
BX640677 Gold_excellent 3 5941 1 5940 12 15 26044204 26037707
BX640677 NCBI 34.3 2 5941 1 5940 16 15 26044204 26037707
BX640720 Gold_excellent 11 3367 2 3366 3 7 98825973 98947526
BX640720 NCBI 34.3 11 3367 2 3366 6 7 98825973 98947545
BX640862 Gold_excellent 12 2558 1 2558 9 4 38776881 38843732
BX640862 NCBI 34.3 12 2558 1 2558 22 4 38776881 38843736
BX647330 Gold_excellent 6 656 1 656 2 14 92567123 92573072
BX647330 NCBI 34.3 6 656 1 656 7 14 92567123 92573072
BX648438 Gold_excellent 8 3117 19 3099 8 9 33125320 33100655
BX648438 NCBI 34.3 9 3117 2 3116 31 9 33125335 33095878
BX649159 Gold_excellent 14 4953 1 4953 8 15 81025145 80937773
BX649159 NCBI 34.3 13 4953 1 4953 19 15 81051138 80937772
D83781 Gold_excellent 35 4814 1 4814 6 11 47834174 47764098
D83781 NCBI 34.3 35 4814 1 4814 7 11 47834174 47764098
D87328 Gold_excellent 13 6465 1 6465 3 21 37259169 37043889
D87328 NCBI 34.3 12 6465 1 6465 4 21 37259169 37043889
D87454 Gold_excellent 11 5551 1 5551 0 7 129263424 129327945
D87454 NCBI 34.3 10 5551 1 5551 3 7 129263424 129327944