Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AB051480 Gold_bad 2 4239 2475 1756 68 1|NT_077949 121294 103975
AB051480 Gold_dubious 15 4239 1 1954 4 1 16293115 16273984
AK000030 Gold_bad 2 786 502 285 12 4 26539349 26561237
AK000030 Gold_dubious 1 786 1 526 5 10 133613069 133612544
AK000930 Gold_bad 1 1962 1247 716 4 7 150662904 150662189
AK000930 Gold_dubious 1 1962 1 1463 33 7 150661444 150659981
AK002086 Gold_dubious 6 2435 1 1026 1 7 129712256 129699085
AK021987 Gold_bad 1 1862 7 624 10 15 62561300 62560677
AK021987 Gold_dubious 3 1862 498 1219 44 15 62602493 62596289
AK022421 Gold_bad 1 2134 1 463 12 7 98368319 98367857
AK022421 Gold_dubious 1 2134 498 1636 20 7 98378305 98376671
AK022934 Gold_dubious 14 2748 1 1370 16 7 129769802 129699375
AK023392 Gold_dubious 7 1782 1 1782 34 X 1166269 1179776
AK023392 Gold_dubious 7 1782 1 1782 34 Y 1166269 1179776
AK023880 Gold_dubious 2 2145 1 568 0 1 45586238 45578631
AK024309 Gold_dubious 10 2566 1 2229 41 1 952269 923263
AK025112 Gold_bad 1 1855 1 1018 9 3 124543762 124542746
AK025112 Gold_dubious 5 1855 721 1135 27 7 5987235 6537832
AK025436 Gold_bad 2 3358 1 170 0 1 28300909 28338663
AK025436 Gold_dubious 5 3358 2029 1330 0 1 28503193 28511554
AK025862 Gold_bad 1 2088 2002 87 0 12 102834583 102834670
AK025862 Gold_bad 2 2088 211 164 0 12 102834583 102835796
AK025862 Gold_dubious 1 2088 1 117 1 14 100541347 100541231
AK026267 Gold_dubious 2 1095 4 1095 21 5 180453586 180454268
AK026899 Gold_bad 1 2506 1918 371 3 16 69722368 69722737
AK026899 Gold_bad 1 2506 2282 243 4 16 18458504 18458749
AK026899 Gold_dubious 1 2506 1 786 3 7 65408500 65407712
AK027712 Gold_bad 1 3614 2763 40 1 7 99280495 99280456
AK027712 Gold_dubious 7 3614 1 1539 4 12 131996999 132018379
AK054645 Gold_dubious 14 2423 1 2422 40 9 39278312 39093678
AK054813 Gold_bad 1 1600 1 433 12 X 147320143 147319709
AK054813 Gold_dubious 1 1600 895 706 20 X 147761036 147761740
AK054870 Gold_bad 1 3201 1652 36 2 1 67810543 67810581
AK054870 Gold_bad 1 3201 1664 58 2 2 30050208 30050151
AK054870 Gold_dubious 1 3201 1 1354 10 22 34404512 34403159
AK056120 Gold_dubious 11 2814 100 2715 56 1|NT_079486 164318 176786
AK057363 Gold_dubious 3 1982 11 1972 34 4 138419474 138408585
AK057614 Gold_dubious 13 1764 1 1734 52 14 104787928 104276321
AK057798 Gold_bad 1 1682 1301 382 0 16 376331 376727
AK057798 Gold_dubious 1 1682 1 1300 26 16 377479 378783
AK057893 Gold_bad 1 1998 1130 314 0 9 134606215 134606528
AK057893 Gold_dubious 1 1998 1440 559 1 17 74092731 74093289
AK058037 Gold_bad 1 2013 1 248 1 4 57886964 57886717
AK058037 Gold_bad 7 2013 249 997 30 14 104849768 104180033
AK058037 Gold_dubious 4 2013 1258 756 18 22 21387932 21568169
AK075308 Gold_bad 1 1829 999 831 36 1 202449458 202448626
AK075308 Gold_dubious 5 1829 1 1280 7 11 8897111 8905789
AK090925 Gold_bad 1 2360 1725 636 1 12 51838475 51837840
AK090925 Gold_dubious 3 2360 1 2010 47 15 81392443 81365199
AK092351 Gold_bad 2 4510 1 302 4 1 119958621 119958329
AK092351 Gold_dubious 13 4510 2977 1534 1 1 145723710 145709590
AK092688 Gold_bad 1 1785 1329 52 0 1 224817649 224817597
AK092688 Gold_bad 1 1785 1509 41 1 11 6985709 6985749
AK092688 Gold_dubious 1 1785 34 62 1 8 127551810 127551871
AK092753 Gold_bad 1 1820 1 82 0 2 89087202 89087283
AK092753 Gold_dubious 1 1820 1454 367 5 2 89062396 89062030
AK093696 Gold_dubious 2 2059 1 2059 38 2 235650103 235648063
AK094009 Gold_bad 1 2580 497 40 1 17 74022672 74022633
AK094009 Gold_dubious 1 2580 1695 886 0 12 7058863 7057978
AK094221 Gold_bad 2 1853 335 354 10 2 9568342 9567877
AK094221 Gold_bad 2 1853 683 450 12 2 9568438 9567877
AK094221 Gold_dubious 2 1853 1015 839 12 2 9568438 9567540
AK094237 Gold_dubious 7 2025 1 2025 31 6 31471759 31487236
AK096058 Gold_bad 3 2365 1266 1100 4 X 48047279 48049205
AK096058 Gold_dubious 1 2365 1 1265 41 X 48040148 48038883
AK096220 Gold_dubious 8 2872 14 2836 61 5 876949 763213
AK097042 Gold_dubious 2 1810 1 601 0 2 89378788 89058824
AK097171 Gold_bad 2 2511 1 219 3 19 11959471 11973639
AK097171 Gold_dubious 1 2511 437 2070 32 6 159954921 159952852
AK097305 Gold_dubious 10 1611 1 1503 45 14 105142101 104145137
AK097359 Gold_dubious 5 1622 4 1249 25 14 104490605 104179353
AK097366 Gold_dubious 7 1620 2 1407 41 14 104787926 104179360
AK097432 Gold_dubious 11 1914 1 1916 29 15 82789846 82782906
AK097528 Gold_bad 2 2995 1328 1291 37 20 55776144 55792938
AK097528 Gold_dubious 2 2995 1 1839 12 20 55782730 55784803
AK097955 Gold_dubious 10 1625 3 1589 24 14 105151014 104145137
AK098337 Gold_bad 1 2493 2298 196 0 3 50114026 50114222
AK098337 Gold_dubious 1 2493 1 2303 72 4 49094879 49097186
AK098813 Gold_bad 1 1656 1 827 4 19 58690138 58690963
AK098813 Gold_dubious 2 1656 695 962 39 19 58608150 58689709
AK098817 Gold_bad 1 1990 1722 269 0 11 62059003 62058735
AK098817 Gold_dubious 10 1990 1 1618 34 14 104697409 104179351
AK122596 Gold_dubious 9 2417 1 2417 47 12 7791385 7771623
AK123070 Gold_dubious 5 1612 345 1185 19 14 104510819 104179360
AK123399 Gold_dubious 2 2237 2 2159 46 19 49038051 49040235
AK123498 Gold_bad 1 2440 2103 338 2 6 24813406 24813071
AK123498 Gold_dubious 13 2440 1 2103 44 2 48957397 48833964
AK123783 Gold_dubious 10 1624 3 1579 38 14 104898398 104145137
AK124097 Gold_bad 2 2351 1276 1074 44 4 49427747 49428853
AK124097 Gold_dubious 1 2351 1 1281 8 4 57436 58717
AK124473 Gold_dubious 3 2210 1 2210 37 4 24412362 24424072
AK125237 Gold_bad 1 2222 1163 33 0 2 161738244 161738212
AK125237 Gold_bad 1 2222 1857 75 5 5 54920043 54919967
AK125237 Gold_dubious 4 2222 1 643 1 10 27551697 27581759
AK125293 Gold_bad 1 2139 1400 33 1 3 143921800 143921768
AK125293 Gold_bad 1 2139 1439 30 0 19 53978556 53978527
AK125293 Gold_dubious 1 2139 1307 30 0 5 23205789 23205760
AK125735 Gold_bad 1 1436 1336 101 3 5 75110872 75110973
AK125735 Gold_dubious 5 1436 1 1057 20 5 75097538 75112756
AK126043 Gold_bad 2 4449 4003 447 0 12 122175716 122179018
AK126043 Gold_dubious 1 4449 1 719 0 6 161473704 161474423
AK126281 Gold_dubious 9 1624 1 1497 44 14 104613727 104179353
AK126306 Gold_bad 1 3408 1959 121 0 2 120512225 120512346
AK126306 Gold_dubious 13 3408 1 3294 61 2 120468345 120514973
AK126884 Gold_dubious 5 3448 2 3447 77 12 48560717 48555142
AK127378 Gold_dubious 4 2638 698 1841 31 16 89833599 89852059
AK127397 Gold_dubious 2 2187 1 2187 44 6 72080688 72078554
AK127415 Gold_dubious 8 1628 1 1592 34 14 104663879 104179353
AK127601 Gold_dubious 4 1821 1 1819 50 12 48560724 48557632
AK128491 Gold_bad 1 4174 2191 30 0 4 84870241 84870271
AK128491 Gold_bad 1 4174 2298 33 0 15 33360170 33360203
AK128491 Gold_dubious 1 4174 2069 41 1 10 111385718 111385759
AK128694 Gold_dubious 3 4067 1 4067 109 5 38869048 38864983
AK128845 Gold_dubious 5 3582 1 3133 54 19 56543596 56540240
AK128866 Gold_bad 1 2163 225 824 22 19 52605534 52604709
AK128866 Gold_dubious 2 2163 1 1520 20 19 52608705 52606928
AK129495 Gold_dubious 3 1768 2 1757 32 9 44189681 44187936
AK129499 Gold_bad 1 1750 1 403 0 7 130667205 130667607
AK129499 Gold_bad 2 1750 399 825 17 7 130666257 130684372
AK129499 Gold_dubious 1 1750 957 608 14 7 130665657 130666264
AK129512 Gold_dubious 15 1589 2 1501 37 14 105142101 104179360
AK129636 Gold_bad 1 1646 1370 277 10 5 132329915 132329639
AK129636 Gold_bad 2 1646 442 935 22 5 132331048 132316505
AK129636 Gold_dubious 1 1646 1 309 1 5 132317287 132316979
AK129809 Gold_dubious 6 1531 1 1456 25 14 105142104 104179360
AK130008 Gold_bad 1 3403 2167 428 1 9 126460661 126460234
AK130008 Gold_dubious 5 3403 1 3065 64 9 126455170 126444785
AK130023 Gold_bad 1 2022 1289 496 5 3 53183770 53184266
AK130023 Gold_bad 1 2022 1779 244 0 3 53183739 53184002
AK130023 Gold_dubious 3 2022 64 1157 41 3 53181854 53188008
AK130333 Gold_dubious 2 1812 1 1812 29 22 29030142 29028355
AK130433 Gold_dubious 11 1611 1 1587 45 14 105103236 104145137
AK130434 Gold_bad 1 1639 1 136 6 14 104582528 104582393
AK130434 Gold_dubious 4 1639 505 1135 23 14 104209428 104179352
AK130453 Gold_dubious 11 1636 1 1586 43 14 104663879 104145133
AK130465 Gold_dubious 7 1584 1 1536 27 14 104777354 104145137
AK130468 Gold_dubious 11 1645 20 1582 37 14 105184701 104145133
AK130510 Gold_bad 1 2344 2 821 18 12 109340755 109339935
AK130510 Gold_dubious 4 2344 829 1516 25 12 109351800 109340787
AK130577 Gold_dubious 5 1642 1 1249 23 14 104763211 104179360
AK130611 Gold_dubious 11 1582 1 1553 41 14 104849768 104179354
AK130614 Gold_dubious 9 1607 4 1553 32 14 104490605 104081083
AK130635 Gold_bad 1 1330 1 211 6 15 56929290 56929083
AK130635 Gold_dubious 2 1330 209 1122 24 15 56935684 56927184
AK130751 Gold_bad 1 2208 1754 214 1 19 39389382 39389596
AK130751 Gold_bad 1 2208 1959 250 0 7 127849559 127849809
AK130751 Gold_dubious 1 2208 1 437 1 19 16533639 16533203
AK130763 Gold_bad 1 2201 1 844 20 9 126513865 126514710
AK130763 Gold_dubious 1 2201 840 1362 16 6 42047787 42046426
AK130786 Gold_dubious 12 1594 1 1557 45 14 105142101 104179360
AK130794 Gold_bad 2 1649 1201 452 15 8 66692855 66692394
AK130794 Gold_dubious 3 1649 3 1191 12 8 66695934 66692067
AK130796 Gold_dubious 8 1575 1 1538 32 14 104777357 104145137
AK130825 Gold_dubious 8 1903 1 1856 33 14 104424844 104037954
AK131084 Gold_bad 1 5537 5359 179 4 16 15164798 15164616
AK131084 Gold_bad 7 5537 4520 804 11 16 14815487 14825487
AK131084 Gold_dubious 5 5537 1 2252 5 16 15195709 15193017
AL117609 Gold_dubious 10 2524 1 1186 2 8 104384196 104411788
AL137725 Gold_dubious 3 1787 108 1341 25 8 145055502 145045481
AL832869 Gold_dubious 2 2865 1 1529 0 19 12600148 12601684
BC002783 Gold_dubious 4 1536 9 1455 23 9|NT_078081 34796 80376
BC006164 Gold_bad 1 1582 1 488 7 12 8832135 8832622
BC006164 Gold_dubious 3 1582 790 677 12 12 8831612 8839651
BC006435 Gold_dubious 3 1384 1 1384 26 7 66155733 66154351
BC009956 Gold_dubious 6 1168 1 1168 33 6 33088265 33079681
BC010437 Gold_dubious 5 2780 1 2642 41 2 170793066 170809543
BC012835 Gold_dubious 4 1538 1 1465 33 9|NT_078081 34786 80376
BC013097 Gold_bad 3 942 1 496 8 9 110858639 110835912
BC013097 Gold_dubious 1 942 407 536 12 9 110834611 110835147
BC014667 Gold_dubious 7 1641 1 1595 44 14 104582516 104179353
BC015595 Gold_dubious 3 3072 10 1734 0 22 30665506 30678144
BC016381 Gold_dubious 12 1622 5 1524 31 14 105142098 104106134
BC017024 Gold_dubious 4 2015 1 1930 42 21 10120823 10079192
BC017122 Gold_bad 1 1052 896 54 0 7 16642774 16642828
BC017122 Gold_dubious 1 1052 1 225 0 1 3599953 3600178
BC017443 Gold_dubious 14 2744 1 1366 14 7 129769798 129699375
BC021708 Gold_dubious 9 1397 1 1397 24 6 29902755 29906806
BC029166 Gold_dubious 3 2305 1 2305 39 9 134312344 134314664
BC029266 Gold_bad 2 3230 1 157 0 1 28300922 28338663
BC029266 Gold_dubious 5 3230 1901 1330 1 1 28503193 28511553
BC029276 Gold_bad 1 985 3 54 1 8 70652301 70652248
BC029276 Gold_bad 1 985 228 366 1 1 91324949 91324584
BC029276 Gold_dubious 3 985 706 224 8 12 126004086 126003701
BC029907 Gold_bad 1 1390 4 32 0 16 27736428 27736460
BC029907 Gold_dubious 2 1390 131 1260 23 1 93273000 93269598
BC030712 Gold_dubious 17 3237 7 1899 3 12 94838842 94763295
BC032484 Gold_bad 5 2948 2100 849 0 X 147769452 147825486
BC032484 Gold_dubious 6 2948 1 2011 47 X 147326968 147320166
BC032544 Gold_dubious 3 1939 12 359 0 1 45586232 45573280
BC033389 Gold_bad 1 1421 102 73 4 7 57489014 57488941
BC033389 Gold_dubious 2 1421 174 1248 32 4 191168036 191169917
BC034158 Gold_bad 1 944 1 175 3 17 76882732 76882906
BC034158 Gold_dubious 1 944 128 817 13 17 76877769 76876953
BC035367 Gold_dubious 9 852 1 852 13 19 57082908 57050869
BC036250 Gold_dubious 5 1042 1 1042 23 4 1097148 1076926
BC046646 Gold_bad 1 695 10 124 0 1 146793160 146793284
BC046646 Gold_dubious 3 695 133 563 14 1 142757605 142768869
BC048283 Gold_dubious 2 1803 1 1803 28 6 29961969 29960177
BC051328 Gold_dubious 7 1578 1 1554 33 14 104613715 104179360
BC051807 Gold_bad 1 1637 765 873 12 21 45204924 45205796
BC051807 Gold_dubious 1 1637 1 930 17 21 45204243 45205176
BC056916 Gold_bad 1 1644 1133 33 0 11 68749400 68749368
BC056916 Gold_dubious 1 1644 1268 36 1 20 5635541 5635577
BC062335 Gold_dubious 7 1593 1 1542 39 14 104490592 104081084
BC062787 Gold_bad 1 1047 891 54 0 7 16642774 16642828
BC062787 Gold_dubious 1 1047 3 218 1 1 3599961 3600178
BC064931 Gold_dubious 14 2301 1 2301 55 6 57229266 57560212
BX538005 Gold_bad 1 5625 3878 1751 9 1|NT_077949 121294 119546
BX538005 Gold_bad 19 5625 1944 2327 99 1|NT_079497 31751 74330
BX538005 Gold_dubious 12 5625 4 2155 65 1 142484811 142512789
BX538066 Gold_dubious 6 1482 1 1458 41 14 104777318 104024904
BX538217 Gold_dubious 5 3657 1 3636 56 22 20966485 20962867
BX640626 Gold_dubious 9 1565 1 1492 43 14 104613727 104145137
BX640710 Gold_dubious 7 1542 2 1522 31 14 104939205 104024904
BX640780 Gold_bad 1 3642 2553 37 1 19 9776147 9776111
BX640780 Gold_bad 1 3642 2646 45 1 4 177975878 177975834
BX640780 Gold_dubious 1 3642 3255 388 3 13 112373995 112374382
BX640847 Gold_dubious 6 1566 2 1350 23 14 104443408 104145135
BX640853 Gold_dubious 10 1634 2 1609 43 14 104966022 104179354
BX640854 Gold_dubious 8 1564 2 1527 31 14 104966022 104024906