Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK023392 | Gold_dubious | 7 | 1782 | 1 | 1782 | 34 | X | 1166269 | 1179776 |
AK023392 | Gold_dubious | 7 | 1782 | 1 | 1782 | 34 | Y | 1166269 | 1179776 |
AK054709 | Gold_dubious | 2 | 1779 | 1 | 1790 | 29 | 16 | 21410360 | 21406143 |
AK054709 | Gold_dubious | 2 | 1779 | 1 | 1790 | 29 | 16 | 21842636 | 21838423 |
AK054709 | Gold_dubious | 2 | 1779 | 1 | 1790 | 29 | 16 | 22484292 | 22488509 |
BC009269 | Gold_dubious | 2 | 1146 | 1 | 161 | 0 | X | 1938459 | 1921916 |
BC009269 | Gold_dubious | 2 | 1146 | 1 | 161 | 0 | Y | 1938459 | 1921916 |
BC015400 | Gold_dubious | 3 | 648 | 1 | 648 | 15 | 2 | 114450210 | 114451756 |
BC015400 | Gold_dubious | 3 | 648 | 1 | 648 | 15 | 15 | 100250482 | 100252027 |
BC019696 | Gold_dubious | 3 | 1271 | 5 | 284 | 0 | X | 2014094 | 1921916 |
BC019696 | Gold_dubious | 3 | 1271 | 5 | 284 | 0 | Y | 2014094 | 1921916 |
BC032340 | Gold_dubious | 3 | 1271 | 1 | 299 | 0 | X | 2014109 | 1921916 |
BC032340 | Gold_dubious | 3 | 1271 | 1 | 299 | 0 | Y | 2014109 | 1921916 |
BC048328 | Gold_dubious | 11 | 1718 | 1 | 1718 | 39 | 2 | 114436847 | 114451759 |
BC048328 | Gold_dubious | 11 | 1718 | 1 | 1718 | 40 | 15 | 100237097 | 100252030 |
BC062672 | Gold_dubious | 2 | 616 | 5 | 615 | 12 | X | 139366672 | 139029201 |
BC062672 | Gold_dubious | 2 | 616 | 5 | 615 | 12 | X | 139480435 | 139479173 |