Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK024602 | Gold_good | 1 | 1375 | 1 | 1375 | 6 | 7 | 71939182 | 71937809 |
AK024602 | Gold_good | 1 | 1375 | 1 | 1375 | 6 | 7 | 74521890 | 74523265 |
AK026462 | Gold_good | 5 | 801 | 3 | 799 | 4 | X | 120441 | 113605 |
AK026462 | Gold_good | 5 | 801 | 3 | 799 | 4 | Y | 120441 | 113605 |
AK026887 | Gold_good | 1 | 854 | 1 | 854 | 5 | 1 | 37836801 | 37835948 |
AK026887 | Gold_good | 1 | 854 | 1 | 854 | 5 | 1|NT_077945 | 121455 | 120602 |
AK054980 | Gold_good | 1 | 2297 | 1 | 2297 | 11 | 8 | 8059433 | 8061731 |
AK054980 | Gold_good | 1 | 2297 | 1 | 2297 | 11 | 8 | 12369039 | 12366742 |
AK074528 | Gold_good | 5 | 2134 | 1 | 2134 | 28 | X | 121309 | 112204 |
AK074528 | Gold_good | 5 | 2134 | 1 | 2134 | 28 | Y | 121309 | 112204 |
AK092630 | Gold_good | 2 | 2485 | 1 | 2485 | 10 | 17 | 36492861 | 36496361 |
AK092630 | Gold_good | 2 | 2485 | 1 | 2485 | 10 | 17 | 36710829 | 36707329 |
AK094156 | Gold_good | 1 | 3302 | 1 | 3302 | 19 | 1 | 142087759 | 142084460 |
AK094156 | Gold_good | 1 | 3302 | 1 | 3302 | 19 | 1 | 142410853 | 142407552 |
AK094644 | Gold_good | 2 | 2253 | 1 | 2252 | 12 | 9 | 44058230 | 44064520 |
AK094644 | Gold_good | 2 | 2253 | 1 | 2252 | 12 | 9 | 44309555 | 44303265 |
AK096908 | Gold_good | 1 | 1376 | 1 | 1376 | 18 | 10 | 46566704 | 46565332 |
AK096908 | Gold_good | 1 | 1376 | 1 | 1376 | 18 | 10 | 47632905 | 47634277 |
AK096998 | Gold_good | 1 | 2059 | 1 | 2059 | 10 | X | 2177147 | 2179210 |
AK096998 | Gold_good | 1 | 2059 | 1 | 2059 | 10 | Y | 2177147 | 2179210 |
AK097346 | Gold_good | 1 | 1740 | 1 | 1740 | 18 | X | 110459 | 112199 |
AK097346 | Gold_good | 1 | 1740 | 1 | 1740 | 18 | Y | 110459 | 112199 |
AK097872 | Gold_good | 6 | 2235 | 1 | 2235 | 10 | X | 121695 | 113606 |
AK097872 | Gold_good | 6 | 2235 | 1 | 2235 | 10 | Y | 121695 | 113606 |
AK122959 | Gold_good | 3 | 1940 | 1 | 1940 | 9 | 1 | 1174546 | 1176745 |
AK122959 | Gold_good | 3 | 1940 | 1 | 1940 | 9 | 1|NT_079486 | 73527 | 75724 |
AK126147 | Gold_good | 1 | 1988 | 1 | 1988 | 17 | X | 1301533 | 1299554 |
AK126147 | Gold_good | 1 | 1988 | 1 | 1988 | 17 | Y | 1301533 | 1299554 |
AK126237 | Gold_good | 1 | 1990 | 1 | 1980 | 12 | 3 | 46446014 | 46444034 |
AK126237 | Gold_good | 1 | 1990 | 1 | 1980 | 12 | 3|NT_079509 | 132513 | 130533 |
AK130562 | Gold_good | 9 | 1485 | 1 | 1485 | 12 | 15 | 80431443 | 80444448 |
AK130562 | Gold_good | 9 | 1485 | 1 | 1485 | 12 | 15 | 80817968 | 80830973 |
AL050127 | Gold_good | 3 | 1686 | 1 | 1686 | 22 | X | 1149065 | 1147117 |
AL050127 | Gold_good | 3 | 1686 | 1 | 1686 | 22 | Y | 1149065 | 1147117 |
AL050202 | Gold_good | 4 | 1169 | 1 | 1169 | 5 | 1 | 1195702 | 1194128 |
AL050202 | Gold_good | 4 | 1169 | 1 | 1169 | 5 | 1|NT_079486 | 6535 | 8106 |
AL117485 | Gold_good | 6 | 3561 | 2 | 3560 | 44 | 22 | 17214654 | 17221746 |
AL117485 | Gold_good | 6 | 3561 | 2 | 3560 | 44 | 22 | 19967375 | 19974467 |
AL136789 | Gold_good | 5 | 2247 | 1 | 2247 | 9 | 2 | 131292315 | 131286494 |
AL136789 | Gold_good | 5 | 2247 | 1 | 2247 | 9 | 2 | 131648414 | 131654224 |
AL157501 | Gold_good | 5 | 831 | 1 | 831 | 8 | X | 244370 | 237153 |
AL157501 | Gold_good | 5 | 831 | 1 | 831 | 8 | Y | 244370 | 237153 |
AL833339 | Gold_good | 9 | 3190 | 1 | 3190 | 17 | 16 | 69761265 | 69774075 |
AL833339 | Gold_good | 9 | 3190 | 1 | 3190 | 17 | 16 | 69984195 | 69997002 |
BC000719 | Gold_good | 13 | 2781 | 1 | 2781 | 16 | 2 | 242897863 | 242934009 |
BC000719 | Gold_good | 13 | 2781 | 1 | 2781 | 16 | 2|NT_079503 | 54918 | 91065 |
BC005363 | Gold_good | 4 | 416 | 2 | 415 | 4 | X | 48204750 | 48209477 |
BC005363 | Gold_good | 4 | 416 | 2 | 415 | 4 | X | 48242960 | 48285908 |
BC009032 | Gold_good | 6 | 1075 | 1 | 1075 | 11 | X | 244625 | 237155 |
BC009032 | Gold_good | 6 | 1075 | 1 | 1075 | 11 | Y | 244625 | 237155 |
BC017177 | Gold_good | 9 | 4076 | 1 | 4076 | 17 | 10 | 46146746 | 46121621 |
BC017177 | Gold_good | 9 | 4076 | 1 | 4076 | 17 | 10 | 48347080 | 48321979 |
BC019875 | Gold_good | 1 | 671 | 1 | 671 | 6 | 2 | 243017444 | 243018114 |
BC019875 | Gold_good | 1 | 671 | 1 | 671 | 6 | 2|NT_079503 | 173848 | 174518 |
BC024278 | Gold_good | 9 | 4076 | 1 | 4076 | 17 | 10 | 46146746 | 46121621 |
BC024278 | Gold_good | 9 | 4076 | 1 | 4076 | 17 | 10 | 48347080 | 48321979 |
BC024914 | Gold_good | 5 | 529 | 1 | 529 | 3 | X | 48242989 | 48250320 |
BC024914 | Gold_good | 5 | 529 | 1 | 529 | 3 | X | 48252547 | 48259870 |
BC029274 | Gold_good | 2 | 1638 | 1 | 1638 | 13 | X | 153684863 | 153687159 |
BC029274 | Gold_good | 2 | 1638 | 1 | 1638 | 13 | Y | 50279027 | 50281323 |
BC032353 | Gold_good | 4 | 1639 | 1 | 1639 | 9 | 1 | 1737 | 4272 |
BC032353 | Gold_good | 4 | 1639 | 1 | 1639 | 9 | 15 | 100254560 | 100252025 |
BC032774 | Gold_good | 9 | 709 | 12 | 706 | 4 | 15 | 32397948 | 32392059 |
BC032774 | Gold_good | 9 | 709 | 12 | 706 | 4 | 15 | 32544169 | 32538280 |
BC039251 | Gold_good | 4 | 3181 | 1 | 3181 | 16 | 9 | 131555531 | 131600552 |
BC039251 | Gold_good | 4 | 3181 | 3 | 3179 | 15 | 9|NT_079538 | 78518 | 123890 |
BC042832 | Gold_good | 1 | 1206 | 1 | 1206 | 18 | 16 | 21420607 | 21419386 |
BC042832 | Gold_good | 1 | 1206 | 1 | 1206 | 18 | 16 | 22474044 | 22475249 |
BC047753 | Gold_good | 7 | 1179 | 1 | 1179 | 8 | 7 | 71888785 | 71924113 |
BC047753 | Gold_good | 7 | 1179 | 1 | 1179 | 8 | 7 | 74600316 | 74564981 |
BC054477 | Gold_good | 3 | 954 | 5 | 954 | 7 | 2 | 110392558 | 110400321 |
BC054477 | Gold_good | 3 | 954 | 5 | 954 | 7 | 2 | 111043931 | 111036168 |
BC057819 | Gold_good | 3 | 823 | 1 | 823 | 4 | 1 | 37701613 | 37702771 |
BC057819 | Gold_good | 3 | 823 | 1 | 823 | 4 | 1|NT_077945 | 142518 | 141360 |
BC063429 | Gold_good | 13 | 1873 | 1 | 1873 | 9 | X | 289624 | 237155 |
BC063429 | Gold_good | 13 | 1873 | 1 | 1873 | 9 | Y | 289624 | 237155 |
BC063555 | Gold_good | 10 | 2144 | 1 | 2144 | 14 | 1 | 9099 | 4269 |
BC063555 | Gold_good | 10 | 2144 | 1 | 2144 | 14 | 15 | 100247193 | 100252030 |
BC063631 | Gold_good | 1 | 985 | 1 | 985 | 7 | 22 | 18764765 | 18763778 |
BC063631 | Gold_good | 1 | 985 | 1 | 985 | 7 | 22 | 20158544 | 20157557 |
BC063682 | Gold_good | 7 | 1220 | 1 | 1220 | 16 | X | 153683922 | 153687203 |
BC063682 | Gold_good | 7 | 1220 | 1 | 1220 | 16 | Y | 50278086 | 50281367 |
BC064615 | Gold_good | 1 | 1149 | 1 | 1149 | 5 | 5 | 69526489 | 69527637 |
BC064615 | Gold_good | 1 | 1149 | 1 | 1149 | 5 | 5 | 70278711 | 70279877 |
BC064615 | Gold_good | 1 | 1149 | 1 | 1149 | 5 | 8|NT_079526 | 159246 | 160412 |
BC065740 | Gold_good | 1 | 1598 | 2 | 1597 | 16 | 7 | 75720116 | 75721726 |
BC065740 | Gold_good | 1 | 1598 | 4 | 1595 | 15 | 7 | 76218223 | 76219816 |
BX538190 | Gold_good | 5 | 2642 | 1 | 2642 | 11 | 9 | 40228852 | 40245640 |
BX538190 | Gold_good | 5 | 2642 | 1 | 2642 | 11 | 9|NT_078078 | 177125 | 160336 |
BX647292 | Gold_good | 2 | 1945 | 1 | 1945 | 10 | X | 1301506 | 1299554 |
BX647292 | Gold_good | 2 | 1945 | 1 | 1945 | 10 | Y | 1301506 | 1299554 |
BX647918 | Gold_good | 1 | 1815 | 1 | 1815 | 19 | 1 | 367306 | 369122 |
BX647918 | Gold_good | 1 | 1815 | 1 | 1815 | 19 | 1 | 702140 | 700324 |
BX647918 | Gold_good | 1 | 1815 | 1 | 1815 | 19 | 11 | 118125 | 116309 |
BX649081 | Gold_good | 4 | 2484 | 1 | 2484 | 14 | 1 | 18707342 | 18667399 |
BX649081 | Gold_good | 4 | 2484 | 1 | 2484 | 14 | 1|NT_079499 | 67228 | 27289 |