Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK024602 Gold_good 1 1375 1 1375 6 7 71939182 71937809
AK024602 Gold_good 1 1375 1 1375 6 7 74521890 74523265
AK026462 Gold_good 5 801 3 799 4 X 120441 113605
AK026462 Gold_good 5 801 3 799 4 Y 120441 113605
AK026887 Gold_good 1 854 1 854 5 1 37836801 37835948
AK026887 Gold_good 1 854 1 854 5 1|NT_077945 121455 120602
AK054980 Gold_good 1 2297 1 2297 11 8 8059433 8061731
AK054980 Gold_good 1 2297 1 2297 11 8 12369039 12366742
AK074528 Gold_good 5 2134 1 2134 28 X 121309 112204
AK074528 Gold_good 5 2134 1 2134 28 Y 121309 112204
AK092630 Gold_good 2 2485 1 2485 10 17 36492861 36496361
AK092630 Gold_good 2 2485 1 2485 10 17 36710829 36707329
AK094156 Gold_good 1 3302 1 3302 19 1 142087759 142084460
AK094156 Gold_good 1 3302 1 3302 19 1 142410853 142407552
AK094644 Gold_good 2 2253 1 2252 12 9 44058230 44064520
AK094644 Gold_good 2 2253 1 2252 12 9 44309555 44303265
AK096908 Gold_good 1 1376 1 1376 18 10 46566704 46565332
AK096908 Gold_good 1 1376 1 1376 18 10 47632905 47634277
AK096998 Gold_good 1 2059 1 2059 10 X 2177147 2179210
AK096998 Gold_good 1 2059 1 2059 10 Y 2177147 2179210
AK097346 Gold_good 1 1740 1 1740 18 X 110459 112199
AK097346 Gold_good 1 1740 1 1740 18 Y 110459 112199
AK097872 Gold_good 6 2235 1 2235 10 X 121695 113606
AK097872 Gold_good 6 2235 1 2235 10 Y 121695 113606
AK122959 Gold_good 3 1940 1 1940 9 1 1174546 1176745
AK122959 Gold_good 3 1940 1 1940 9 1|NT_079486 73527 75724
AK126147 Gold_good 1 1988 1 1988 17 X 1301533 1299554
AK126147 Gold_good 1 1988 1 1988 17 Y 1301533 1299554
AK126237 Gold_good 1 1990 1 1980 12 3 46446014 46444034
AK126237 Gold_good 1 1990 1 1980 12 3|NT_079509 132513 130533
AK130562 Gold_good 9 1485 1 1485 12 15 80431443 80444448
AK130562 Gold_good 9 1485 1 1485 12 15 80817968 80830973
AL050127 Gold_good 3 1686 1 1686 22 X 1149065 1147117
AL050127 Gold_good 3 1686 1 1686 22 Y 1149065 1147117
AL050202 Gold_good 4 1169 1 1169 5 1 1195702 1194128
AL050202 Gold_good 4 1169 1 1169 5 1|NT_079486 6535 8106
AL117485 Gold_good 6 3561 2 3560 44 22 17214654 17221746
AL117485 Gold_good 6 3561 2 3560 44 22 19967375 19974467
AL136789 Gold_good 5 2247 1 2247 9 2 131292315 131286494
AL136789 Gold_good 5 2247 1 2247 9 2 131648414 131654224
AL157501 Gold_good 5 831 1 831 8 X 244370 237153
AL157501 Gold_good 5 831 1 831 8 Y 244370 237153
AL833339 Gold_good 9 3190 1 3190 17 16 69761265 69774075
AL833339 Gold_good 9 3190 1 3190 17 16 69984195 69997002
BC000719 Gold_good 13 2781 1 2781 16 2 242897863 242934009
BC000719 Gold_good 13 2781 1 2781 16 2|NT_079503 54918 91065
BC005363 Gold_good 4 416 2 415 4 X 48204750 48209477
BC005363 Gold_good 4 416 2 415 4 X 48242960 48285908
BC009032 Gold_good 6 1075 1 1075 11 X 244625 237155
BC009032 Gold_good 6 1075 1 1075 11 Y 244625 237155
BC017177 Gold_good 9 4076 1 4076 17 10 46146746 46121621
BC017177 Gold_good 9 4076 1 4076 17 10 48347080 48321979
BC019875 Gold_good 1 671 1 671 6 2 243017444 243018114
BC019875 Gold_good 1 671 1 671 6 2|NT_079503 173848 174518
BC024278 Gold_good 9 4076 1 4076 17 10 46146746 46121621
BC024278 Gold_good 9 4076 1 4076 17 10 48347080 48321979
BC024914 Gold_good 5 529 1 529 3 X 48242989 48250320
BC024914 Gold_good 5 529 1 529 3 X 48252547 48259870
BC029274 Gold_good 2 1638 1 1638 13 X 153684863 153687159
BC029274 Gold_good 2 1638 1 1638 13 Y 50279027 50281323
BC032353 Gold_good 4 1639 1 1639 9 1 1737 4272
BC032353 Gold_good 4 1639 1 1639 9 15 100254560 100252025
BC032774 Gold_good 9 709 12 706 4 15 32397948 32392059
BC032774 Gold_good 9 709 12 706 4 15 32544169 32538280
BC039251 Gold_good 4 3181 1 3181 16 9 131555531 131600552
BC039251 Gold_good 4 3181 3 3179 15 9|NT_079538 78518 123890
BC042832 Gold_good 1 1206 1 1206 18 16 21420607 21419386
BC042832 Gold_good 1 1206 1 1206 18 16 22474044 22475249
BC047753 Gold_good 7 1179 1 1179 8 7 71888785 71924113
BC047753 Gold_good 7 1179 1 1179 8 7 74600316 74564981
BC054477 Gold_good 3 954 5 954 7 2 110392558 110400321
BC054477 Gold_good 3 954 5 954 7 2 111043931 111036168
BC057819 Gold_good 3 823 1 823 4 1 37701613 37702771
BC057819 Gold_good 3 823 1 823 4 1|NT_077945 142518 141360
BC063429 Gold_good 13 1873 1 1873 9 X 289624 237155
BC063429 Gold_good 13 1873 1 1873 9 Y 289624 237155
BC063555 Gold_good 10 2144 1 2144 14 1 9099 4269
BC063555 Gold_good 10 2144 1 2144 14 15 100247193 100252030
BC063631 Gold_good 1 985 1 985 7 22 18764765 18763778
BC063631 Gold_good 1 985 1 985 7 22 20158544 20157557
BC063682 Gold_good 7 1220 1 1220 16 X 153683922 153687203
BC063682 Gold_good 7 1220 1 1220 16 Y 50278086 50281367
BC064615 Gold_good 1 1149 1 1149 5 5 69526489 69527637
BC064615 Gold_good 1 1149 1 1149 5 5 70278711 70279877
BC064615 Gold_good 1 1149 1 1149 5 8|NT_079526 159246 160412
BC065740 Gold_good 1 1598 2 1597 16 7 75720116 75721726
BC065740 Gold_good 1 1598 4 1595 15 7 76218223 76219816
BX538190 Gold_good 5 2642 1 2642 11 9 40228852 40245640
BX538190 Gold_good 5 2642 1 2642 11 9|NT_078078 177125 160336
BX647292 Gold_good 2 1945 1 1945 10 X 1301506 1299554
BX647292 Gold_good 2 1945 1 1945 10 Y 1301506 1299554
BX647918 Gold_good 1 1815 1 1815 19 1 367306 369122
BX647918 Gold_good 1 1815 1 1815 19 1 702140 700324
BX647918 Gold_good 1 1815 1 1815 19 11 118125 116309
BX649081 Gold_good 4 2484 1 2484 14 1 18707342 18667399
BX649081 Gold_good 4 2484 1 2484 14 1|NT_079499 67228 27289