Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK026570 | Gold_partial | 5 | 628 | 154 | 475 | 0 | 15 | 80540677 | 80536983 |
AK026570 | Gold_partial | 5 | 628 | 154 | 475 | 0 | 15 | 80935020 | 80931326 |
BC005128 | Gold_partial | 7 | 873 | 16 | 858 | 0 | 9 | 131491821 | 131494325 |
BC005128 | Gold_partial | 7 | 873 | 16 | 858 | 0 | 9|NT_079538 | 14146 | 16650 |
BC014636 | Gold_partial | 6 | 1570 | 392 | 1179 | 1 | X | 123066 | 113606 |
BC014636 | Gold_partial | 6 | 1570 | 392 | 1179 | 1 | Y | 123066 | 113606 |
BC025719 | Gold_partial | 7 | 1230 | 184 | 1047 | 0 | 1 | 1579676 | 1581546 |
BC025719 | Gold_partial | 7 | 1230 | 184 | 1047 | 0 | 1|NT_077964 | 48499 | 50369 |
BC035595 | Gold_partial | 2 | 253 | 16 | 246 | 3 | 1 | 1216595 | 1216144 |
BC035595 | Gold_partial | 2 | 253 | 16 | 246 | 3 | 1|NT_079486 | 189559 | 190010 |