Arabidopsis thaliana gene ATTAP2, encoding ATTAP2 (Arabidopsis thaliana transporter associated with antigen processing protein 2); ATPase, coupled to transmembrane movement of substances.
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SUMMARY back to top
TAIR annotates one representative transcript.

AceView synopsis, each blue text links to tables and details
According to AceView, this gene is moderately expressed, only 39.6% of the average gene in this release. The sequence of this gene is defined by 15 GenBank accessions, some from aerial (seen 4 times), flower, leaf and root (2), ovule (2), flower buds (once), leaf (once), rosette leaf (once). We annotate structural defects or features in one cDNA clone.
The gene contains 16 distinct gt-ag introns. Transcription produces one mRNA.
Function: There are 3 articles specifically referring to this gene in PubMed. Functionally, the gene has been proposed to participate in a process (transport). Proteins are expected to have molecular functions (transporter activity, ATP binding, ATPase activity, ATPase activity, coupled to transmembrane movement of substances) and to localize in various compartments (membrane, integral to membrane).
Please see the Arabidopsis TAIR site TAIR:AT5G39040 for in depth functional annotation of this gene.
The spliced mRNA putatively encodes a good protein, containing domains ABC transporter, transmembrane region, ABC transporter-like [Pfam], some transmembrane domains [Psort2].

Please quote: AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12.
Map on chromosome 5, links to other databases and other names
Map: This gene ATTAP2 maps on chromosome 5. In AceView, it covers 4.22 kb, from 15642807 to 15647031 (NCBI 7_1, April 2007), on the direct strand.
Links to: manual annotations from TAIR:AT5G39040, the SNP view, gene overviews from Entrez Gene 833896, expression data from UniGene.
Other names: The gene is also known as ATTAP2, At5g39040, Arabidopsis thaliana transporter associated with antigen processing protein 2, MXF12.50 or MXF12_50, LOC833896. It has been described as ATTAP2 (Arabidopsis thaliana transporter associated with antigen processing protein 2); ATPase, coupled to transmembrane movement of substances.
Closest AceView homologs in other species ?
The closest human genes, according to BlastP, are the AceView genes ABCB10 (e= 10-117), ABCB9 (e= 10-105).
The closest mouse genes, according to BlastP, are the AceView genes Abcb10 (e= 10-118), Abcb9 (e= 10-106).
The closest C.elegans genes, according to BlastP, are the AceView/WormGenes haf-9 (e= 10-105), haf-2 (e= 10-102), haf-4 (e= 10-102), haf-7 (e=9 10-98), haf-6 (e=10-97), which may contain interesting functional annotation
          Complete gene on genome diagram: back to top
Please choose between the zoomable GIF version., and the HTML5/SVG version.
This diagram shows in true scale the gene on the genome, the mRNAs and the cDNA clones.
Compact gene diagram back to top
Gene ATTAP2 5' 3' encoded on plus strand of chromosome 5 from 15,642,807 to 15,647,031 a 1 2kb 0 169 bp exon 169 bp exon 360 bp [gt-ag] intron 5 GenBank accessions 66 bp exon 78 bp [gt-ag] intron 5 GenBank accessions 36 bp exon 79 bp [gt-ag] intron 5 GenBank accessions 75 bp exon 144 bp [gt-ag] intron 5 GenBank accessions 125 bp exon 79 bp [gt-ag] intron 5 GenBank accessions 100 bp exon 162 bp [gt-ag] intron 4 GenBank accessions 172 bp exon 98 bp [gt-ag] intron 4 GenBank accessions 119 bp exon 93 bp [gt-ag] intron 4 GenBank accessions 111 bp exon 92 bp [gt-ag] intron 6 GenBank accessions 145 bp exon 79 bp [gt-ag] intron 6 GenBank accessions 133 bp exon 89 bp [gt-ag] intron 6 GenBank accessions 76 bp exon 222 bp [gt-ag] intron 6 GenBank accessions 66 bp exon 87 bp [gt-ag] intron 6 GenBank accessions 108 bp exon 98 bp [gt-ag] intron 5 GenBank accessions 108 bp exon 174 bp [gt-ag] intron 4 GenBank accessions 198 bp exon 93 bp [gt-ag] intron 5 GenBank accessions 391 bp exon 14 accessions, some from aerial (seen 4 times) flower, leaf and root (2) ovule (2), flower buds (once) leaf (once) Validated 3' end, 1 accession 391 bp exon Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
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Sequences: click on the numbers to get the DNA back to top
mRNA variant mRNA matching the genome Best predicted protein 5' UTR 3' UTR Upstream sequence Transcription
unit
pre-mRNA
Downstream sequence
aOct08 2198 bp 644 aa 82 bp 181 bp 2kb probably including promoter 4225 bp 1kb

Gene neighbors and Navigator on chromosome 5 back to top
C C AT5G38820 C AT5G38840 C AT5G38850 C BIM3 C R P AT5G38890 C R AT5G38895 C R AT5G38910 C AT5G38930 C AT5G38940 C AT5G38950 C AT5G38960 C AT5G38980 C R AT5G38990 C R AT5G39000 C AT5G39010 C AT5G39020 C AT5G39030 C ATTAP2 C P AT5G39050 C AT5G39080 C R AT5G39090 C R CRR7 D C P AT5G39220 C R AT5G39230 C R AT5G39250 AT5G39024 C P ATBZIP43 C AT5G38810 C P AT5G38830 C AT5G38880 C R AT5G38900 C AT5G38920 D C R P BR6OX1 C C C C GLP6 C AT5G39110 C AT5G39120 C P AT5G39130 C AT5G39140 C AT5G39150 C AT5G39155 C R AT5G39160 C AT5G39170 C AT5G39180 C AT5G39185 C R GLP2A C AT5G39200 C AT5G39240 10 20kb 0 AT5G38780, 7 accessions AT5G38790, 1 accession AT5G38820, 1 accession AT5G38840, 14 accessions AT5G38850, 15 accessions BIM3, 26 accessions, 3 variants AT5G38890, 19 accessions 3 variants AT5G38895, 12 accessions 2 variants AT5G38910, 1 accession AT5G38930, 1 accession AT5G38940, 19 accessions AT5G38950, 1 accession AT5G38960, 1 accession AT5G38980, 77 accessions AT5G38990, 65 accessions AT5G39000, 5 accessions AT5G39010, 1 accession AT5G39020, 39 accessions AT5G39030, 5 accessions ATTAP2, 15 accessions AT5G39050, 48 accessions AT5G39080, 62 accessions AT5G39090, 6 accessions CRR7, 28 accessions, 2 variants AT5G39220, 18 accessions 2 variants AT5G39230, 2 accessions 2 variants forbo, 1 accession foybo, 1 accession snuder, 9 accessions snoder, 1 accession gubo, 1 accession AT5G39024, 1 accession gorbo, 1 accession feybo, 3 accessions smoyder, 1 accession snader, 1 accession snyder, 1 accession gabo, 1 accession gybo, 1 accession gerbo, 1 accession geybo, 1 accession goybo, 21 accessions snarder, 2 accessions ATBZIP43, 7 accessions AT5G38810, 1 accession AT5G38830, 34 accessions AT5G38880, 30 accessions AT5G38900, 19 accessions AT5G38920, 1 accession BR6OX1, 21 accessions 2 variants gobo, 33 accessions geebo, 2 accessions jabo, 38 accessions GLP6, 7 accessions AT5G39110, 1 accession AT5G39120, 2 accessions AT5G39130, 16 accessions AT5G39140, 1 accession AT5G39150, 3 accessions AT5G39155, 3 accessions AT5G39160, 59 accessions 3 variants AT5G39170, 1 accession AT5G39180, 2 accessions AT5G39185, 3 accessions GLP2A, 68 accessions, 3 variants AT5G39200, 1 accession AT5G39240, 4 accessions ZOOM IN                D:disease,C:conserved,I:interactions,R:regulation,P:publications         Read more...
Annotated mRNA diagrams back to top
Bibliography:               3 articles in PubMed back to top
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes C

To mine knowledge about the gene, please click the 'Gene Summary' or the 'Function, regulation, related genes ' tab at the top of the page. The 'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The 'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To see the mRNA diagram, sequence and annotation, click the 'mRNA' tab. To examine expression data from all cDNAs clustered in this gene by AceView, click the 'Expression tissue'.

If you know more about this gene, or found errors, please share your knowledge. Thank you !