RefSeq summary
[ACADVL] The protein encoded by this gene is targeted to the inner mitochondrial membrane where it catalyzes the first step of the mitochondrial fatty acid beta-oxidation pathway. This acyl-Coenzyme A dehydrogenase is specific to long-chain and very-long-chain fatty acids. A deficiency in this gene product reduces myocardial fatty acid beta-oxidation and is associated with cardiomyopathy. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq].
RefSeq annotates 2 representative transcripts (NM included in AceView variants .a and .c), but Homo sapiens cDNA sequences in GenBank, dbEST, Trace and SRA, filtered against clone rearrangements, coaligned on the genome and clustered in a minimal non-redundant way by the manually supervised AceView program, support at least 36 spliced variants .
AceView synopsis, each blue text links to tables and details
Note that this locus is complex: it appears to produce several proteins with no sequence overlap.
Expression: According to AceView, this gene is
expressed at very high level , 6.9 times the average gene in this release. The
sequence of this gene is defined by
1131 GenBank accessions , some from brain (seen 34 times), lung (33), eye (28), testis (24), pancreas (23), uterus (21), prostate (20) and 187 other
tissues .
Alternative mRNA variants and regulation: The gene contains
37 distinct introns (30 gt-ag, 7 gc-ag). Transcription produces
38 different mRNAs , 36 alternatively spliced variants and 2 unspliced forms. There are 6 probable
alternative promotors , 6 non overlapping alternative last exons and 15 validated
alternative polyadenylation sites (see the
diagram ). The mRNAs appear to differ by truncation of the 5' end, truncation of the 3' end, presence or absence of 27
cassette exons , overlapping exons with different boundaries, splicing versus retention of 22 introns. 1123 bp of this gene
are antisense to spliced gene DLG4 , 1393 to
tuwer , raising the possibility of regulated alternate expression.
4 variants were isolated
in vivo , despite the fact that they are predicted targets of
nonsense mediated mRNA decay (NMD).
Efficacy of translation may be reduced by the presence of a shorter translated product (
uORF ) initiating at an AUG upstream of the main open reading frame (in variant eAug10, mAug10, uAug10, veAug10).
Function: There are
29 articles specifically referring to this gene in PubMed. Functionally, the gene has been tested for association to
diseases (OMIM: acyl-coa dehydrogenase, very long-chain, deficiency of; Other sources: Cardiomyopathies; Cholesterol, HDL/blood*; Chromosome Deletion; Death, Sudden; Metabolism, Inborn Errors; Muscular Diseases; Neuropsychological Tests; Syndrome; VLCAD deficiency), proposed to participate in
pathways (Fatty acid metabolism, Metabolic pathways) and
processes (fatty acid beta-oxidation using acyl-CoA dehydrogenase, fatty acid metabolic process, lipid metabolic process, negative regulation of fatty acid biosynthetic process, negative regulation of fatty acid oxidation, oxidation reduction, regulation of cholesterol metabolic process, temperature homeostasis). Proteins are expected to have molecular
functions (FAD binding, long-chain-acyl-CoA dehydrogenase activity) and to
localize in various compartments (cytoplasm, mitochondrion, membrane, mitochondrial inner membrane). A putative
protein interactor has been described (ACADVL).
Protein coding potential: 33 spliced mRNAs putatively encode
good proteins , altogether
34 different isoforms (18 complete, 9 COOH complete, 7 partial ), some containing
domains Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain [Pfam]. The remaining 5 mRNA variants (3 spliced, 2 unspliced; 2 partial) appear not to encode good proteins.
3 isoforms are annotated using as Met a
Kozak-compatible non-AUG start, thereby gaining a minimum of 62 amino acids N-terminal to the first AUG. Finally proteins from this gene may be modulated by
acetylation; phosphorylation; sumoylation; ubiquitination , as detailed at PhosphoSite.
Please quote:
AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12 .
Map on chromosome 17, links to other databases and other names
Map: This gene ACADVL maps on chromosome 17, at 17p13.1 according to Entrez Gene. In AceView, it covers
8.15 kb , from 7120444 to 7128590 (NCBI 37, August 2010), on the direct strand.
Links to: manual annotations from
OMIM_201475 ,
GAD ,
KEGG_00071 ,
KEGG_01100 ,
PhosphoSite , the
SNP view, gene overviews from
Entrez Gene 37 ,
GeneCards , expression data from
ECgene ,
UniGene , molecular and other annotations from
UCSC , or our
GOLD analysis.
The previous AceView annotation is
here .
Other names: The gene is also known as ACADVL, ACAD6, LCACD or VLCAD, LOC37. It has been described as very long-chain specific acyl-CoA dehydrogenase, mitochondrial, acyl-Coenzyme A dehydrogenase, very long chain.
EC number: This gene encodes protein number: 1.3.99.-.
Closest AceView homologs in other species
?
The closest mouse gene , according to BlastP, is the AceView gene
meesu (e=10
-10 ).
The closest C.elegans gene , according to BlastP, is the AceView/WormGene
acdh-12 (e=10
-06 ), which may contain interesting functional annotation.
The closest A.thaliana gene , according to BlastP, is the AceView gene
IVD (e=3 10
-27 ), which may contain interesting functional annotation
ACADVL
Gene expression in 15 primates, 16 tissues, from the NHPRTR project in sFPKM
BAB
SkeletalMuscle
WholeBlood
CHP
Kidney
Liver
Lung
Spleen
CMC
CMM
Cerebellum
HUM
Brain
Colon
Heart
LymphNode
Ovary
Testis
JMI
BoneMarrow
MLM
OWL
PTM
RMC
RMI
Pituitary
SQM
Thymus
MST
SMY
RTL
151
37.6
92.7
114
37.6
131
57.1
40.3
40.3
35.1
49.7
26.6
53.2
281
140
213
61.1
99.3
106
37.6
43.2
26.6
49.7
16.4
6.65
9.41
75.3
99.3
18.8
61.1
37.6
40.3
40.3
35.1
65.5
43.2
281
301
301
53.2
35.1
23.2
114
371
131
213
30.6
35.1
70.2
32.8
35.1
323
57.1
151
524
151
70.2
131
53.2
49.7
23.2
199
61.1
65.5
40.3
46.3
37.6
106
46.3
37.6
213
602
199
131
46.3
28.5
75.3
49.7
26.6
40.3
185
106
40.3
37.6
75.3
30.6
114
489
46.3
30.6
80.7
75.3
426
140
262
43.2
26.6
228
32.8
32.8
140
37.6
99.3
281
122
32.8
61.1
30.6
61.1
49.7
21.6
43.2
185
40.3
80.7
228
371
49.7
46.3
106
32.8
86.5
456
35.1
301
80.7
185
122
30.6
53.2
40.3
86.5
49.7
43.2
53.2
28.5
12.4
46.3
20.2
46.3
26.6
456
161
262
46.3
140
35.1
46.3
35.1
114
3.57
14.3
13.3
21.6
20.2
57.1
43.2
Expression
quantiles
None
Weak
1
2
3
4
5
6
7
8
10
20
This gene
All genes
log2 distributions
RNA-seq gene expression profile across 16 selected tissues from the Non-Human Primates Reference Transcriptome Resource (link to
NHPRTR project ).
- Primates:
Apes (
HUM : Human (Illumina BodyMap 2),
CHP : Chimpanzee),
Old World monkeys (
PTM : Pig-Tailed Macaque,
JMI Japanese Macaque,
RMI Rhesus Macaque Indian,
RMC Rhesus Macaque Chinese,
CMM Cynomolgus Macaque Mauritian,
CMC Cynomolgus Macaque Chinese,
BAB Olive Baboon,
SMY Sooty Mangabey);
New World monkeys (
MST common Marmoset,
SQM Squirrel Monkey,
OWL Owl Monkey); and
Lemurs (
MLM Mouse Lemur,
RTL Ring-Tailed Lemur).
- The level for significantly expressed genes is color coded in 8 equal sized bins (light to dark green). Light gray is for weak not-accurately measured expression (2 to 8 reads above intergenic background); dark gray for no expression or no sequence conservation (0 read in gene). The plot to the right shows the distribution of measured expression values in all tissues for
all genes (blue) and for
this gene (green) , in Magic index = log
2 (1000 sFPKM).
You may also examine the strand-specific
genome coverage plots on the experimental AceView/Magic hub at UCSC , by tissue or by species. Tracks may be
slow to load ; please reload if some tracks come up yellow-greenish, and thanks to UCSC for the great work!.
Read more...
About UCSC tracks: you may enjoy the plots for the summed coverage over all primates' libraries (top track), summarizing 3 terabases of stranded RNA-seq. Fragments mapping on the + strand of the genome (from genes on the + strand) are red (or dark), on minus strand blue (or light) and antisense transcribed areas are black or overlaid. The vertical scale for each track is self-adapting. Homozygous SNPs tracks are also presented.
About mapping: Primates body map RNA-seq data were stringently mapped to the human genome using the NCBI Magic pipeline. Normalized results are shown as significant FPKM (sFPKM), which includes corrections on F, K and M, computed from parameters measured directly in each RNA-seq experiment, to render the expression measures more significant and more robust to experimental biases. Only fragments with both reads mapped uniquely and over at least 80+80 bases ending with 8 exact bases on each side of each read, and facing each other in a single site or gene, are included in the computation of the sFPKM/index, in the coverage plots, and in the determination of homozygous SNPs (minimum coverage 10, minimum allele frequency 95%). But be aware that genes whose sequence evolved to become too distant from Human cannot be measured well, this bias can be appreciated in the per-species coverage plots at UCSC.
About libraries: For non-human primates, total RNA libraries used TruSeq, ribozero and the stranded UDG protocol. The human 2010 libraries used the polyA selected non-stranded protocol, with short reads (50, 75 or 50+50 bases); furthermore the insert lengths are larger in human than in the non-human primates (average insert size 187 bp in non-human primates versus 232 bp in human). These protocol differences may impact expression measures for the non polyadenylated genes (or genes with shorter or occasional polyA tails), for the pseudogenes or close gene families (specificity is reduced in humans due to shorter reads), and for the very short genes.
Complete gene on genome diagram:
Compact gene diagram
Gene ACADVL
5'
3'
encoded on plus strand of chromosome 17 from 7,120,444 to 7,128,590
296260
337668
a
[NM]
30
15
296260
337668
b
9115
296260
337668
c
[NM]
296260
337668
d
296260
337668
e
40
296260
337668
833
f
296260
337668
g
296260
337668
h
296260
337668
i
296260
vj
337668
j
vn
337668
k
296260
l
vk
vg
337668
m
9115
296260
1
n
25
296260
o
va
296260
66
p
337668
r
296260
q
833
t
296260
s
833
vq
296260
u
vp
24
296260
vb
ve
3115
337668
vc
296260
43
vd
vl
337668
vf
vo-u
vh
vi
vm-u
1kb
0
213 bp exon
213 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
130 bp exon
95 bp [gc-ag] intron
111 GenBank accessions
181296 RNA-seq supporting reads
44104 UHR pooled cells
16782 Brain
13710 Blood
104809 Neuroblastoma
1891 Other
(also 56722 Primates bodymap)
126 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
199 bp exon
267 bp [gt-ag] intron
83 GenBank accessions
155099 RNA-seq supporting reads
43654 UHR pooled cells
17103 Brain
7521 Blood
85324 Neuroblastoma
1497 Other
(also 56173 Primates bodymap)
105 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
310 bp exon
192 accessions, NM_000018.2
some from adrenal gland (seen 11 times)
lung (11), prostate (10)
uterus (9), cerebellum (8)
Validated 3' end, 16 accessions
310 bp exon
49 bp exon
542 bp [gt-ag] intron
1 GenBank accession
29 RNA-seq supporting reads
2 UHR pooled cells
2 Brain
1 Blood
24 Neuroblastoma
(also 7 Primates bodymap)
103 bp exon
2303 bp [gc-ag] intron
1 GenBank accession
14 RNA-seq supporting reads
2 UHR pooled cells
1 Brain
1 Blood
10 Neuroblastoma
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
130 bp exon
95 bp [gc-ag] intron
111 GenBank accessions
181296 RNA-seq supporting reads
44104 UHR pooled cells
16782 Brain
13710 Blood
104809 Neuroblastoma
1891 Other
(also 56722 Primates bodymap)
126 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
199 bp exon
267 bp [gt-ag] intron
83 GenBank accessions
155099 RNA-seq supporting reads
43654 UHR pooled cells
17103 Brain
7521 Blood
85324 Neuroblastoma
1497 Other
(also 56173 Primates bodymap)
105 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
309 bp exon
180 accessions, some from eye (seen 18 times)
lung (12), skin (10)
stomach (9), brain (8)
Validated 3' end, 43 accessions
309 bp exon
1070 bp exon
1070 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
406 bp [gt-ag] intron
19 GenBank accessions
9096 RNA-seq supporting reads
714 UHR pooled cells
496 Brain
65 Blood
7538 Neuroblastoma
283 Other
(also 117 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
130 bp exon
95 bp [gc-ag] intron
111 GenBank accessions
181296 RNA-seq supporting reads
44104 UHR pooled cells
16782 Brain
13710 Blood
104809 Neuroblastoma
1891 Other
(also 56722 Primates bodymap)
126 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
199 bp exon
267 bp [gt-ag] intron
83 GenBank accessions
155099 RNA-seq supporting reads
43654 UHR pooled cells
17103 Brain
7521 Blood
85324 Neuroblastoma
1497 Other
(also 56173 Primates bodymap)
105 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
309 bp exon
52 accessions, NM_001033859.1
some from brain (seen 8 times)
adenocarcinoma, cell line (3)
hippocampus (3), liver (3)
lymph (3)
Validated 3' end, 2 accessions
309 bp exon
143 bp exon
143 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
60 bp [gt-ag] intron
1 GenBank accession
213 RNA-seq supporting reads
43 UHR pooled cells
12 Brain
12 Blood
145 Neuroblastoma
1 Other
(also 19 Primates bodymap)
168 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
130 bp exon
95 bp [gc-ag] intron
111 GenBank accessions
181296 RNA-seq supporting reads
44104 UHR pooled cells
16782 Brain
13710 Blood
104809 Neuroblastoma
1891 Other
(also 56722 Primates bodymap)
126 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
199 bp exon
267 bp [gt-ag] intron
83 GenBank accessions
155099 RNA-seq supporting reads
43654 UHR pooled cells
17103 Brain
7521 Blood
85324 Neuroblastoma
1497 Other
(also 56173 Primates bodymap)
105 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
309 bp exon
1 accession from lung
capped 5' end, 1 accession
309 bp exon
353 bp exon
353 bp exon
258 bp uORF
353 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
73 bp exon
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
130 bp exon
130 bp exon
95 bp [gc-ag] intron
111 GenBank accessions
181296 RNA-seq supporting reads
44104 UHR pooled cells
16782 Brain
13710 Blood
104809 Neuroblastoma
1891 Other
(also 56722 Primates bodymap)
126 bp exon
126 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
199 bp exon
199 bp exon
267 bp [gt-ag] intron
83 GenBank accessions
155099 RNA-seq supporting reads
43654 UHR pooled cells
17103 Brain
7521 Blood
85324 Neuroblastoma
1497 Other
(also 56173 Primates bodymap)
105 bp exon
105 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
309 bp exon
309 bp exon
26 accessions, some from amygdala (seen 4 times)
ductal carcinoma, cell line (3)
pancreas (3), brain (2)
bladder (once)
capped 5' end, 17 accessions
Validated 3' end, 1 accession
309 bp exon
39 bp exon
39 bp exon
2948 bp [gt-ag] intron
1 GenBank accession
39 RNA-seq supporting reads
39 Neuroblastoma
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
130 bp exon
95 bp [gc-ag] intron
111 GenBank accessions
181296 RNA-seq supporting reads
44104 UHR pooled cells
16782 Brain
13710 Blood
104809 Neuroblastoma
1891 Other
(also 56722 Primates bodymap)
126 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
199 bp exon
267 bp [gt-ag] intron
83 GenBank accessions
155099 RNA-seq supporting reads
43654 UHR pooled cells
17103 Brain
7521 Blood
85324 Neuroblastoma
1497 Other
(also 56173 Primates bodymap)
105 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
251 bp [gt-ag] intron
8 GenBank accessions
19883 RNA-seq supporting reads
1049 UHR pooled cells
1939 Brain
465 Blood
16332 Neuroblastoma
98 Other
(also 128 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
13 bp exon
13 bp exon
302 bp [gc-ag] intron
4 GenBank accessions
829 RNA-seq supporting reads
288 UHR pooled cells
118 Brain
417 Neuroblastoma
6 Other
(also 3 Primates bodymap)
3 accessions, some from embryonic stem cells
embryoid bodiesderived from H1
H7 and H9 cells (seen once)
leiomyosarcoma (once)
placenta normal (once)
uterus (once)
8 bp exon
131 bp exon
131 bp exon
131 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
351 bp exon
351 bp exon
351 bp exon
351 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
199 bp exon
199 bp exon
267 bp [gt-ag] intron
83 GenBank accessions
155099 RNA-seq supporting reads
43654 UHR pooled cells
17103 Brain
7521 Blood
85324 Neuroblastoma
1497 Other
(also 56173 Primates bodymap)
105 bp exon
105 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
310 bp exon
310 bp exon
20 accessions, some from fetal liver (seen 3 times)
liver (3), colon (2)
placenta (2), adenocarcinoma cell line (once)
310 bp exon
158 bp exon
158 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
130 bp exon
130 bp exon
95 bp [gc-ag] intron
111 GenBank accessions
181296 RNA-seq supporting reads
44104 UHR pooled cells
16782 Brain
13710 Blood
104809 Neuroblastoma
1891 Other
(also 56722 Primates bodymap)
126 bp exon
126 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
571 bp exon
571 bp exon
571 bp exon
571 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
309 bp exon
309 bp exon
55 accessions, some from brain (seen 6 times)
head neck (5), placenta normal (4)
testis (4), epidermis (3)
Validated 3' end, 1 accession
309 bp exon
108 bp exon
108 bp exon
108 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
130 bp exon
130 bp exon
95 bp [gc-ag] intron
111 GenBank accessions
181296 RNA-seq supporting reads
44104 UHR pooled cells
16782 Brain
13710 Blood
104809 Neuroblastoma
1891 Other
(also 56722 Primates bodymap)
1061 bp exon
1061 bp exon
1061 bp exon
1061 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
309 bp exon
309 bp exon
6 accessions, some from adenocarcinoma (seen 2 times)
bladder (once), brain (once)
colon (once), fetal liver (once)
Validated 3' end, 1 accession
309 bp exon
168 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
555 bp exon
555 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
8 accessions, some from corpus callosum (seen once)
dorsal root ganglia (once)
hippocampus (once), lung (once)
placenta (once)
capped 5' end, 5 accessions
117 bp exon
60 bp exon
267 bp [gt-ag] intron
83 GenBank accessions
155099 RNA-seq supporting reads
43654 UHR pooled cells
17103 Brain
7521 Blood
85324 Neuroblastoma
1497 Other
(also 56173 Primates bodymap)
105 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
95 bp exon
80 bp [gc-ag] intron
1 GenBank accession
226 RNA-seq supporting reads
62 UHR pooled cells
20 Brain
5 Blood
138 Neuroblastoma
1 Other
(also 56 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
91 bp exon
1 accession from adenocarcinoma
cell line from breast
91 bp exon
271 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
460 bp exon
460 bp exon
2 accessions, some from amnion normal (seen once)
hippocampus (once)
capped 5' end, 1 accession
460 bp exon
39 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
162 bp [gt-ag] intron
4 GenBank accessions
6369 RNA-seq supporting reads
442 UHR pooled cells
433 Brain
24 Blood
5436 Neuroblastoma
34 Other
(also 49 Primates bodymap)
170 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
309 bp exon
5 accessions, some from alveolar macrophage (seen once)
head neck (once), lung (once)
pancreas (once), prostate (once)
Validated 3' end, 1 accession
309 bp exon
143 bp exon
143 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
513 bp exon
8 accessions, some from thalamus (seen 2 times)
amygdala (once), colon mucosa (once)
head neck (once), pooled lung and spleen (once)
Validated 3' end, 1 accession
513 bp exon
320 bp exon
320 bp exon
45 bp uORF
320 bp exon
320 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
153 bp exon
153 bp exon
2 accessions, some from eye (seen once)
optic nerve (once)
153 bp exon
186 bp exon
186 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
213 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
157 bp exon
2 accessions, some from cerebellum (seen once)
uterus (once)
capped 5' end, 2 accessions
157 bp exon
1286 bp exon
1286 bp exon
180 bp uORF
1286 bp exon
1286 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
258 bp exon
258 bp exon
47 accessions, some from colon ins (seen 6 times)
testis (3), breast (2)
cerebellum (2), colon (2)
capped 5' end, 12 accessions
258 bp exon
85 bp exon
85 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
406 bp [gt-ag] intron
19 GenBank accessions
9096 RNA-seq supporting reads
714 UHR pooled cells
496 Brain
65 Blood
7538 Neuroblastoma
283 Other
(also 117 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
351 bp exon
351 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
182 bp exon
2300 bp [gc-ag] fuzzy intron
1 GenBank accession
2 accessions, some from knee (seen once)
osteoarthritic cartilage (once)
testis (once)
Validated 3' end, 1 accession
116 bp exon
56 bp exon
56 bp exon
177 bp [gt-ag] intron
1 GenBank accession
24 RNA-seq supporting reads
1 UHR pooled cells
4 Brain
1 Blood
18 Neuroblastoma
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
224 bp exon
1 accession
224 bp exon
27 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
232 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
309 bp exon
1 accession from cell lines from chondrosarcoma
Validated 3' end, 1 accession
309 bp exon
143 bp exon
143 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
254 bp [gt-ag] intron
1 GenBank accession
65 RNA-seq supporting reads
7 UHR pooled cells
3 Brain
1 Blood
54 Neuroblastoma
(also 2 Primates bodymap)
52 bp exon
1 accession from thymus
52 bp exon
72 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
251 bp [gt-ag] intron
8 GenBank accessions
19883 RNA-seq supporting reads
1049 UHR pooled cells
1939 Brain
465 Blood
16332 Neuroblastoma
98 Other
(also 128 Primates bodymap)
73 bp exon
90 bp [gt-ag] intron
16 GenBank accessions
29373 RNA-seq supporting reads
4754 UHR pooled cells
2844 Brain
21 Blood
21574 Neuroblastoma
180 Other
69 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
20 bp exon
2 accessions, some from lung (seen once)
lung carcinoma (once)
pericardium (once)
20 bp exon
168 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
213 bp exon
213 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
130 bp exon
95 bp [gc-ag] intron
111 GenBank accessions
181296 RNA-seq supporting reads
44104 UHR pooled cells
16782 Brain
13710 Blood
104809 Neuroblastoma
1891 Other
(also 56722 Primates bodymap)
331 bp exon
8 accessions, some from thymus (seen 2 times)
dorsal root ganglia (once)
duodenal adenocarcinoma
cell line (once), embryonic stem cell
retinoic acid andmitogen-treated hes cell line H7 (once)
lung (once)
capped 5' end, 3 accessions
331 bp exon
15 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
15 bp exon
140 bp [gt-ag] intron
1 GenBank accession
336 RNA-seq supporting reads
87 UHR pooled cells
27 Brain
217 Neuroblastoma
5 Other
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
13 bp exon
302 bp [gc-ag] intron
4 GenBank accessions
829 RNA-seq supporting reads
288 UHR pooled cells
118 Brain
417 Neuroblastoma
6 Other
(also 3 Primates bodymap)
309 bp exon
3 accessions, some from leiomyosarcoma (seen once)
nervous tumor (once)
soft tissue (once)
Validated 3' end, 2 accessions
309 bp exon
59 bp exon
59 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
50 bp exon
80 bp [gc-ag] intron
1 GenBank accession
2 RNA-seq supporting reads
2 UHR pooled cells
154 bp exon
1 accession from spleen
capped 5' end, 1 accession
154 bp exon
113 bp exon
113 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
175 bp exon
175 bp exon
302 bp [gc-ag] intron
4 GenBank accessions
829 RNA-seq supporting reads
288 UHR pooled cells
118 Brain
417 Neuroblastoma
6 Other
(also 3 Primates bodymap)
2 accessions, some from small intestine (seen once)
uterus tumor (once)
6 bp exon
580 bp exon
580 bp exon
120 bp uORF
580 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
73 bp exon
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
135 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
145 bp exon
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
130 bp exon
130 bp exon
95 bp [gc-ag] intron
111 GenBank accessions
181296 RNA-seq supporting reads
44104 UHR pooled cells
16782 Brain
13710 Blood
104809 Neuroblastoma
1891 Other
(also 56722 Primates bodymap)
55 bp exon
16 accessions, some from testis (seen 5 times)
adrenal gland (once)
colon (once), colon, tumor tissue (once)
heart (once)
capped 5' end, 10 accessions
55 bp exon
140 bp exon
140 bp exon
140 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
2 accessions, some from cervix (seen once)
nervous normal (once)
133 bp exon
99 bp exon
99 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
63 bp exon
418 bp [gc-ag] intron
1 GenBank accession
23 RNA-seq supporting reads
4 UHR pooled cells
1 Brain
2 Blood
15 Neuroblastoma
1 Other
114 bp exon
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
976 bp exon
5 accessions, some from brain (seen once)
colon ins (once), embryonic stem cells
embryoid bodiesderived from H1
H7 and H9 cells (once)
liver and spleen (once)
thymus (once)
976 bp exon
130 bp exon
130 bp exon
81 bp uORF
130 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
81 bp uORF
98 bp exon
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
75 bp exon
1 accession from fetal pancreas (4 pooled donors
18 - 20weeks, stratagene #738023)
75 bp exon
131 bp exon
131 bp exon
131 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
135 bp exon
893 bp [gt-ag] intron
2 GenBank accessions
3113 RNA-seq supporting reads
121 UHR pooled cells
579 Brain
11 Blood
2376 Neuroblastoma
26 Other
(also 43 Primates bodymap)
351 bp exon
351 bp exon
351 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
571 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
251 bp [gt-ag] intron
8 GenBank accessions
19883 RNA-seq supporting reads
1049 UHR pooled cells
1939 Brain
465 Blood
16332 Neuroblastoma
98 Other
(also 128 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
8 accessions, some from pancreas (seen 4 times)
insulinoma (3), adenocarcinoma (once)
brain (once), embryonic stem cells
dmso-treated H9 cellline (once)
capped 5' end, 1 accession
Validated 3' end, 2 accessions
309 bp exon
147 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
135 bp exon
135 bp exon
285 bp uORF
479 bp [gt-ag] intron
255 GenBank accessions
296005 RNA-seq supporting reads
54430 UHR pooled cells
27229 Brain
10578 Blood
200796 Neuroblastoma
2972 Other
(also 36897 Primates bodymap)
145 bp exon
285 bp uORF
269 bp [gt-ag] intron
165 GenBank accessions
330179 RNA-seq supporting reads
61962 UHR pooled cells
30176 Brain
16698 Blood
218005 Neuroblastoma
3338 Other
(also 73038 Primates bodymap)
285 bp uORF
351 bp exon
351 bp exon
364 bp [gt-ag] intron
97 GenBank accessions
219315 RNA-seq supporting reads
56464 UHR pooled cells
20647 Brain
15524 Blood
124424 Neuroblastoma
2256 Other
(also 55183 Primates bodymap)
571 bp exon
571 bp exon
184 bp [gt-ag] intron
1 GenBank accession
42 RNA-seq supporting reads
17 UHR pooled cells
1 Brain
1 Blood
22 Neuroblastoma
1 Other
(also 1 Primates bodymap)
309 bp exon
309 bp exon
309 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
63 bp exon
63 bp exon
92 bp [gt-ag] intron
141 GenBank accessions
456822 RNA-seq supporting reads
94436 UHR pooled cells
45026 Brain
14910 Blood
298846 Neuroblastoma
3604 Other
(also 73832 Primates bodymap)
102 bp exon
102 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
73 bp exon
90 bp [gt-ag] intron
16 GenBank accessions
29373 RNA-seq supporting reads
4754 UHR pooled cells
2844 Brain
21 Blood
21574 Neuroblastoma
180 Other
69 bp exon
69 bp exon
69 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
76 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
27 accessions, some from placenta (seen 3 times)
colon ins (2), lung (2)
placenta normal (2), testis (2)
capped 5' end, 3 accessions
Validated 3' end, 4 accessions
310 bp exon
282 bp exon
282 bp exon
120 bp uORF
282 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
213 bp exon
213 bp exon
213 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
65 bp exon
65 bp exon
93 bp [gt-ag] intron
303 GenBank accessions
367290 RNA-seq supporting reads
66179 UHR pooled cells
34083 Brain
18139 Blood
245121 Neuroblastoma
3768 Other
(also 61355 Primates bodymap)
134 bp exon
134 bp exon
4 accessions, some from amygdala (seen once)
lymph (once), lymphoma
cell line (once), thymus (once)
capped 5' end, 3 accessions
134 bp exon
61 bp exon
406 bp [gt-ag] intron
145 GenBank accessions
337523 RNA-seq supporting reads
65530 UHR pooled cells
31853 Brain
9652 Blood
227531 Neuroblastoma
2957 Other
(also 44457 Primates bodymap)
87 bp exon
82 bp [gt-ag] intron
148 GenBank accessions
455440 RNA-seq supporting reads
91265 UHR pooled cells
44015 Brain
18245 Blood
298438 Neuroblastoma
3477 Other
(also 75576 Primates bodymap)
257 bp exon
257 bp exon
76 bp [gt-ag] intron
131 GenBank accessions
403450 RNA-seq supporting reads
84218 UHR pooled cells
38466 Brain
15022 Blood
262743 Neuroblastoma
3001 Other
(also 45447 Primates bodymap)
98 bp exon
77 bp [gt-ag] intron
155 GenBank accessions
361956 RNA-seq supporting reads
70694 UHR pooled cells
33110 Brain
10666 Blood
244615 Neuroblastoma
2871 Other
(also 36043 Primates bodymap)
73 bp exon
86 bp [gt-ag] intron
146 GenBank accessions
320769 RNA-seq supporting reads
63617 UHR pooled cells
30593 Brain
9673 Blood
214813 Neuroblastoma
2073 Other
(also 30506 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
153 GenBank accessions
249243 RNA-seq supporting reads
52345 UHR pooled cells
25089 Brain
10681 Blood
159671 Neuroblastoma
1457 Other
(also 28835 Primates bodymap)
73 bp exon
94 bp [gt-ag] intron
147 GenBank accessions
324263 RNA-seq supporting reads
66428 UHR pooled cells
32258 Brain
10203 Blood
213825 Neuroblastoma
1549 Other
(also 33686 Primates bodymap)
454 bp exon
3 accessions, some from uterus tumor (seen 2 times)
liver and spleen (once)
454 bp exon
578 bp exon
578 bp exon
2 accessions, some from thalamus (seen once)
uterus (once)
capped 5' end, 2 accessions
578 bp exon
272 bp exon
272 bp exon
72 bp [gt-ag] intron
152 GenBank accessions
425395 RNA-seq supporting reads
82290 UHR pooled cells
42144 Brain
10963 Blood
288214 Neuroblastoma
1784 Other
(also 71556 Primates bodymap)
310 bp exon
10 accessions, some from 2 pooled wilms' tumors
one primary and onemetastatic to brain (seen once)
bone (once), kidney (once)
lung (once), poorly differentiated adenocarcinoma withsignet ring cell features (once)
Validated 3' end, 3 accessions
310 bp exon
156 bp exon
156 bp exon
75 bp [gt-ag] intron
234 GenBank accessions
109364 RNA-seq supporting reads
10374 UHR pooled cells
5239 Brain
2013 Blood
91525 Neuroblastoma
213 Other
(also 8011 Primates bodymap)
76 bp exon
266 bp [gt-ag] intron
241 GenBank accessions
224102 RNA-seq supporting reads
27871 UHR pooled cells
14497 Brain
4941 Blood
175936 Neuroblastoma
857 Other
(also 25907 Primates bodymap)
66 bp exon
74 bp [gt-ag] intron
261 GenBank accessions
220224 RNA-seq supporting reads
35199 UHR pooled cells
18846 Brain
11501 Blood
152963 Neuroblastoma
1715 Other
(also 46130 Primates bodymap)
73 bp exon
89 bp [gt-ag] intron
307 GenBank accessions
356731 RNA-seq supporting reads
68338 UHR pooled cells
33709 Brain
15312 Blood
235528 Neuroblastoma
3844 Other
(also 62509 Primates bodymap)
680 bp exon
8 accessions, some from leukopheresis (seen 4 times)
thymus (2), brain (once)
tongue, tumor tissue (once)
capped 5' end, 3 accessions
680 bp exon
2406 bp exon
2406 bp exon
26 accessions, some from placenta cot 25-normalized (seen 5 times)
adenocarcinoma (3), colon (3)
brain (2), lung (2)
Validated 3' end, 2 accessions
2406 bp exon
Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
Read more...
Mouse over the ending of each transcript gives tissues from which the supporting cDNAs were extracted. Details on tissue of origin for each intron and exon is available from the
intron and exons table .
Click on any transcript to open the specific mRNA page, to see the exact cDNA clone support and eventual SNPs and to get details on tissues, sequences, mRNA and protein annotations. Proteins supported by a single continuous cDNA sequence lead to underlining the name/ending of the variant. Names not underlined result from cDNA concatenation in the coding region and should be experimentally checked.
Introns are depicted by broken lines; the height of the top of each intron reflects the relative number of clones supporting this intron.
]^[ A pink broken line denotes an intron with standard boundaries (gt-ag or gc-ag) that is exactly supported (i.e. a cDNA sequence exactly matches the genome over 16 bp, 8 on both sides of the intron).
] ^ ] A blue broken line denotes non-standard introns, exactly supported, but with non-standard at-ac or any other boundaries.
]-[ Pink and
] - ] blue straight lines represent 'fuzzy' introns of the standard and non-standard types respectively, those introns do not follow the 16 bp rule. Black straight lines ]-[denote gaps in the alignments.
Exons: Wide filled pink areas represent putative protein coding regions, narrow empty pink boxes represent the 5'UTR (on the left) and 3' UTR (on the right). Flags identify validated endings: cap site on the 5' side, polyadenylation site on the 3' side. Filled flags correspond to frequent events while empty flags have lesser supporting cDNAs (yet all are validated); at the 3' side, black flags are associated to the main AATAAA signal,
blue flags to any single letter variant of the main . More explanations are given in the
gene help file
Sequences: click on the numbers to get the DNA
Gene neighbors and Navigator on chromosome 17p13.1
R
ACADVL
D
C
I
R
P
R
C17orf81
C
I
R
P
SLC2A4
D
C
I
R
P
C
EIF5A
D
C
I
R
P
RPL7AP64
D
C
I
R
P
ASGR1
D
C
I
R
P
DLG4
R
C
I
R
P
DVL2
C
I
R
PHF23
D
C
I
R
P
DULLARDandGABARAP
D
C
I
R
P
CLDN7
R
D
C
R
P
YBX2
NEURL4andGPS2
10
20kb
0
plarskor, 2 accessions
ACADVL, 743 accessions
38 variants
tower, 2 accessions
C17orf81, 350 accessions
17 variants
SLC2A4, 105 accessions
5 variants
speygler, 1 accession
EIF5A, 451 accessions
10 variants
RPL7AP64, 4 accessions
plaskor, 1 accession
plyskor, 3 accessions
stuboy, 1 accession
pluskor, 1 accession
jorvawbu, 2 accessions
sneegler, 1 accession
hinuma, 22 accessions
smoyley, 3 accessions
hunuma, 23 accessions
snorgler, 1 accession
snerley, 1 accession
jeevawbu, 2 accessions
jeyvawbu, 1 accession
sleyley, 1 accession
plawskor, 1 accession
snogler, 1 accession
pleeskor, 1 accession
snergler, 1 accession
skaskor, 1 accession
shyvu, 1 accession
skyskor, 1 accession
kyvawbu, 1 accession
kovawbu, 1 accession
spargler, 1 accession
skawskor, 1 accession
skeeskor, 2 accessions
snorley, 3 accessions
sparley, 4 accessions
ASGR1, 75 accessions, 7 variants
DLG4, 202 accessions, 12 variants
tuwer, 7 accessions
DVL2, 344 accessions, 15 variants
PHF23, 358 accessions
13 variants
DULLARDandGABARAP, 569 accessions
17 variants
CLDN7, 276 accessions
7 variants
tarwer, 5 accessions
YBX2, 118 accessions, 9 variants
NEURL4andGPS2, 506 accessions
34 variants
ZOOM OUT
D :disease,
C :conserved,
I :interactions,
R :regulation,
P :publications
Read more...
XAF1
D
C
I
R
P
FBXO39
C
R
P
ALOX12P2
C
R
P
ALOX12
D
C
I
R
P
RNASEKandC17orf49
C
R
P
BCL6B
C
I
R
P
SLC16A13
C
P
R
ACADVL
D
C
I
R
P
R
C17orf81
C
I
R
P
SLC2A4
D
C
I
R
P
C
EIF5A
D
C
I
R
P
ACAP1andKCTD11
D
C
I
R
P
TMEM95
C
R
TNK1
D
C
I
R
P
C
NLGN2
C
I
R
P
SPEM1andFGF11andCHRNB1
D
C
I
R
P
C17orf74
C
R
C
TMEM102
C
I
R
P
R
AMAC1L3
C
P
POLR2A
D
C
I
R
P
TNFSF12-TNFSF13
D
C
I
R
P
C
SENP3_
D
C
I
R
P
MPDU1
D
C
I
R
P
R
SHBG
D
C
I
R
P
ATP1B2
D
C
I
R
P
C
WRAP53
D
C
R
P
EFNB3
C
I
R
P
RPL7AP64
C
R
P
TEKT1
C
R
C
C
R
P
SLC16A11
C
R
P
CLEC10A
D
C
I
R
P
ASGR2
D
C
I
R
P
ASGR1
D
C
I
R
P
DLG4
R
C
I
R
P
DVL2
C
I
R
PHF23
D
C
I
R
P
DULLARDandGABARAP
D
C
I
R
P
CLDN7
R
D
C
R
P
YBX2
C
I
R
P
NEURL4andGPS2
C
I
R
P
C17orf61andPLSCR3
C
R
P
ZBTB4
R
R
C
R
P
SOX15
D
C
I
R
P
FXR2
C
I
R
P
SAT2
D
C
I
R
P
TP53
100kb
0
XAF1, 270 accessions, 27 variants
FBXO39, 32 accessions
3 variants
ALOX12P2, 57 accessions
12 variants
ALOX12, 17 accessions
6 variants
RNASEKandC17orf49, 512 accessions
23 variants
BCL6B, 83 accessions, 7 variants
SLC16A13, 10 accessions
2 variants
plarskor, 2 accessions
ACADVL, 743 accessions
38 variants
tower, 2 accessions
C17orf81, 350 accessions
17 variants
SLC2A4, 105 accessions
5 variants
speygler, 1 accession
EIF5A, 451 accessions
10 variants
ACAP1andKCTD11, 267 accessions
15 variants
TMEM95, 13 accessions
4 variants
TNK1, 87 accessions, 11 variants
goylee, 1 accession
NLGN2, 220 accessions
4 variants
SPEM1andFGF11andCHRNB1
244 accessions, 20 variants
C17orf74, 37 accessions
2 variants
moysy, 1 accession
TMEM102, 77 accessions
4 variants
terwer, 11 accessions
3 variants
AMAC1L3, 4 accessions
POLR2A, 601 accessions
13 variants
TNFSF12-TNFSF13, 466 accessions
22 variants
fagley, 1 accession
SENP3_, 976 accessions
48 variants
MPDU1, 492 accessions
27 variants
spyfloy, 10 accessions
2 variants
SHBG, 63 accessions, 25 variants
ATP1B2, 355 accessions
4 variants
rarsy, 1 accession
WRAP53, 362 accessions
12 variants
plogler, 1 accession
bloskor, 2 accessions
davawbu, 2 accessions
dyvawbu, 1 accession
menuma, 1 accession
blawskor, 2 accessions
nutoru, 2 accessions
blerskor, 1 accession
darvawbu, 1 accession
bleyskor, 1 accession
blorskor, 1 accession
pluley, 1 accession
flaskor, 1 accession
dervawbu, 1 accession
dorvawbu, 1 accession
fyvawbu, 2 accessions
fuvawbu, 1 accession
smugler, 1 accession
suwer, 1 accession
sarwer, 4 accessions
fluskor, 2 accessions
flarskor, 2 accessions
smawgler, 3 accessions
fovawbu, 3 accessions
flawskor, 1 accession
feevawbu, 7 accessions
fleyskor, 7 accessions
veyvu, 3 accessions
florskor, 1 accession
yoneri, 2 accessions
floyskor, 2 accessions
glaskor, 2 accessions
gluskor, 2 accessions
glawskor, 2 accessions
gleyskor, 2 accessions
gyvawbu, 1 accession
kluskor, 3 accessions
gawvawbu, 5 accessions
sharseebo, 1 accession
juvawbu, 3 accessions
RPL7AP64, 4 accessions
plaskor, 1 accession
plyskor, 3 accessions
stuboy, 1 accession
pluskor, 1 accession
jorvawbu, 2 accessions
sneegler, 1 accession
hinuma, 22 accessions
smoyley, 3 accessions
hunuma, 23 accessions
snorgler, 1 accession
snerley, 1 accession
skoyskor, 1 accession
swawgler, 2 accessions
sweygler, 1 accession
bygley, 1 accession
boygley, 1 accession
slawskor, 2 accessions
stoley, 1 accession
smoskor, 1 accession
kleyvu, 1 accession
nysy, 1 accession
dugley, 3 accessions
lawvawbu, 2 accessions
starboy, 4 accessions
dogley, 1 accession
leyvawbu, 3 accessions
dargley, 1 accession
lorvawbu, 7 accessions
sneeskor, 2 accessions
myvawbu, 1 accession
gugley, 1 accession
gargley, 1 accession
geegley, 1 accession
goygley, 1 accession
bylor, 1 accession
jeygley, 2 accessions
kugley, 2 accessions
morvawbu, 2 accessions
shaseebo, 1 accession
bluskor, 1 accession
yaneri, 12 accessions
bleeskor, 1 accession
dovawbu, 3 accessions
yuneri, 1 accession
kleyley, 2 accessions
deevawbu, 1 accession
doyvawbu, 1 accession
slergler, 1 accession
sloygler, 1 accession
favawbu, 2 accessions
sower, 2 accessions
flyskor, 1 accession
floskor, 1 accession
fleeskor, 1 accession
ployley, 7 accessions
naheri, 1 accession
feyvawbu, 1 accession
glyskor, 1 accession
pawror, 16 accessions
2 variants
glarskor, 3 accessions
smeegler, 1 accession
glerskor, 1 accession
gavawbu, 1 accession
smeygler, 1 accession
glorskor, 1 accession
guvawbu, 1 accession
klaskor, 1 accession
garvawbu, 6 accessions
hanuma, 2 accessions, 2 variants
klawskor, 1 accession
kleeskor, 3 accessions
goyvawbu, 2 accessions
sorwer, 11 accessions
klorskor, 1 accession
jeevawbu, 2 accessions
jeyvawbu, 1 accession
sleyley, 1 accession
plawskor, 1 accession
snogler, 1 accession
pleeskor, 1 accession
snergler, 1 accession
skaskor, 1 accession
shyvu, 1 accession
skyskor, 1 accession
kyvawbu, 1 accession
kovawbu, 1 accession
spargler, 1 accession
skawskor, 1 accession
skeeskor, 2 accessions
snorley, 3 accessions
sparley, 4 accessions
skorskor, 1 accession
korvawbu, 1 accession
swargler, 1 accession
meesy, 2 accessions
slaskor, 1 accession
slyskor, 2 accessions
sluskor, 1 accession
sloskor, 1 accession
slarskor, 2 accessions
narsy, 4 accessions
flarvu, 1 accession
sleyskor, 1 accession
dagley, 1 accession
slorskor, 1 accession
forseebo, 4 accessions
lavawbu, 1 accession
smyskor, 2 accessions
smavybu, 2 accessions
smarskor, 4 accessions
smeyskor, 2 accessions
mawsko, 1 accession
steeley, 1 accession
swarley, 1 accession
snoskor, 1 accession
smeeroy, 3 accessions
snerskor, 1 accession
fugley, 1 accession
balor, 1 accession
muvawbu, 2 accessions
kargley, 1 accession
mersko, 6 accessions
beelor, 1 accession
spyskor, 1 accession
henuma, 1 accession
mervawbu, 1 accession
meyvawbu, 1 accession
TEKT1, 91 accessions, 7 variants
kunama, 101 accessions
13 variants
monuma, 1 accession
SLC16A11, 51 accessions
4 variants
CLEC10A, 108 accessions
7 variants
ASGR2, 78 accessions, 10 variants
ASGR1, 75 accessions, 7 variants
DLG4, 202 accessions, 12 variants
tuwer, 7 accessions
DVL2, 344 accessions, 15 variants
PHF23, 358 accessions
13 variants
DULLARDandGABARAP, 569 accessions
17 variants
CLDN7, 276 accessions
7 variants
tarwer, 5 accessions
YBX2, 118 accessions, 9 variants
NEURL4andGPS2, 506 accessions
34 variants
C17orf61andPLSCR3, 410 accessions
33 variants
ZBTB4, 370 accessions
6 variants
pluvu, 3 accessions, 3 variants
smoyroy, 24 accessions
5 variants
SOX15, 64 accessions, 4 variants
FXR2, 306 accessions, 6 variants
SAT2, 253 accessions, 15 variants
TP53, 411 accessions, 17 variants
ZOOM IN
D :disease,
C :conserved,
I :interactions,
R :regulation,
P :publications
Read more...
Annotated mRNA diagrams
The mRNAs diagrams with the aligned cDNA sequence accessions and their mismatches are available in the mRNA pages accessible from the tab at the top of the page, or here:
In Flash:
.vd , .b , .t , .h , .vm-u , .m , .g , .a , .u , .c , .e , .l , .vl , .vc , .vh , .vn , .vb , .vq , .k , .f , .vf , .ve , .vp , .vg , .vj , .vo-u , .q , .p , .i , .vi , .d , .r , .n , .j , .o , .s , .vk , .va .
or in GIF:
.vd , .b , .t , .h , .vm-u , .m , .g , .a , .u , .c , .e , .l , .vl , .vc , .vh , .vn , .vb , .vq , .k , .f , .vf , .ve , .vp , .vg , .vj , .vo-u , .q , .p , .i , .vi , .d , .r , .n , .j , .o , .s , .vk , .va
Bibliography:   29 articles in PubMed
? Gene Summary
Gene on genome
mRNA: .a , .b , .c , .d , .e , .f , .g , .h , .i , .j , .k , .l , .m , .n , .o , .p , .q , .r , .s , .t , .u , .va , .vb , .vc , .vd , .ve , .vf , .vg , .vh , .vi , .vj , .vk , .vl , .vm-u , .vn , .vo-u , .vp , .vq
Alternative mRNAs features, proteins, introns, exons, sequences
Expression Tissue
Function, regulation, related genes D C I
To
mine knowledge about the gene, please click the
'Gene Summary' or the
'Function, regulation, related genes ' tab at the top of the page. The
'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The
'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To
compare alternative variants , their summarized annotations, predicted proteins, introns and exons, or to access any sequence, click the
'Alternative mRNAs features' tab. To see a
specific mRNA variant diagram, sequence and annotation, click the variant name in the
'mRNA' tab. To examine
expression data from all cDNAs clustered in this gene by AceView, click the
'Expression tissue' .
If you know more about this gene, or found errors, please
share your knowledge. Thank you !