RefSeq summary
[PTCH1] This gene encodes a member of the patched gene family. The encoded protein is the receptor for sonic hedgehog, a secreted molecule implicated in the formation of embryonic structures and in tumorigenesis, as well as the desert hedgehog and indian hedgehog proteins. This gene functions as a tumor suppressor. Mutations of this gene have been associated with basal cell nevus syndrome, esophageal squamous cell carcinoma, trichoepitheliomas, transitional cell carcinomas of the bladder, as well as holoprosencephaly. Alternative splicing results in multiple transcript variants encoding different isoforms. Additional splice variants have been described, but their full length sequences and biological validity cannot be determined currently. [provided by RefSeq].
RefSeq annotates 7 representative transcripts (NM included in AceView variants .a, .b, .c, .d, .e, .f and .g), but Homo sapiens cDNA sequences in GenBank, dbEST, Trace and SRA, filtered against clone rearrangements, coaligned on the genome and clustered in a minimal non-redundant way by the manually supervised AceView program, support at least 21 spliced variants .
AceView synopsis, each blue text links to tables and details
Note that this locus is complex: it appears to produce several proteins with no sequence overlap.
Expression: According to AceView, this gene is
well expressed , 1.3 times the average gene in this release. The
sequence of this gene is defined by
158 GenBank accessions from 148 cDNA clones, some from brain (seen 17 times), cerebellum (12), colon (10), testis (9), adenocarcinoma (8), lung (6), glioblastoma (pooled) (4) and 50 other
tissues . We annotate
structural defects or features in 16 cDNA clones.
Alternative mRNA variants and regulation: The gene contains
40 distinct introns (38 gt-ag, 2 gc-ag). Transcription produces
23 different mRNAs , 21 alternatively spliced variants and 2 unspliced forms. There are 12 probable
alternative promotors , 5 non overlapping alternative last exons and 11 validated
alternative polyadenylation sites (see the
diagram ). The mRNAs appear to differ by truncation of the 5' end, truncation of the 3' end, presence or absence of 8
cassette exons , overlapping exons with different boundaries, splicing versus retention of 2 introns. 789 bp of this gene
are antisense to spliced gene bartarby , raising the possibility of regulated alternate expression.
2 variants were isolated
in vivo , despite the fact that they are predicted targets of
nonsense mediated mRNA decay (NMD).
Efficacy of translation may be reduced by the presence of a shorter translated product (
uORF ) initiating at an AUG upstream of the main open reading frame (in variant bAug10, dAug10, gAug10, kAug10).
Function: There are
108 articles specifically referring to this gene in PubMed. Functionally, the gene has been tested for association to
diseases (OMIM: Basal cell carcinoma, susceptibility to, 1; Basal cell nevus syndrome; holoprosencephaly 7; Medulloblastoma; Other sources: Astrocytoma; Basal cell carcinoma, somatic; Brain Neoplasms; Carcinoma, Basal Cell; Carcinoma, Papillary and
16 others ), proposed to participate in
pathways (Basal cell carcinoma, Hedgehog signaling pathway, Pathways in cancer, Sonic Hedgehog (Shh) Pathway, Sonic Hedgehog (SHH) Receptor Ptc1 Regulates cell cycle) and
processes (anatomical structure morphogenesis, cell proliferation, dorsal/ventral neural tube patterning, dorsal/ventral pattern formation, embryonic limb morphogenesis, epidermis development, glucose homeostasis, heart morphogenesis, hindlimb morphogenesis, keratinocyte proliferation, mammary gland development, mammary gland duct morphogenesis, mammary gland epithelial cell differentiation, negative regulation of epithelial cell proliferation, negative regulation of multicellular organism growth, neural tube closure, neural tube formation, organ morphogenesis, pattern specification process, protein processing, regulation of growth, regulation of smoothened signaling pathway, response to chlorate, response to drug, response to estradiol stimulus, response to mechanical stimulus, response to organic cyclic substance, response to retinoic acid, signal transduction). Proteins are expected to have molecular
functions (protein binding, hedgehog receptor activity, heparin binding, patched binding) and to
localize in integral to plasma membrane. Putative
protein interactors have been described (CCNB1, CDK1, DHH, HIPK2, IHH, SHH, SMO).
Protein coding potential: 18 spliced mRNAs putatively encode
good proteins , altogether
19 different isoforms (8 complete, 4 COOH complete, 7 partial ), some containing Patched family
domain [Pfam], some transmembrane domains, a peroxisomal domain
[Psort2] . The remaining 5 mRNA variants (3 spliced, 2 unspliced; 2 partial) appear not to encode good proteins.
3 isoforms are annotated using as Met a
Kozak-compatible non-AUG start, thereby gaining a minimum of 87 amino acids N-terminal to the first AUG. Finally proteins from this gene may be modulated by
phosphorylation; ubiquitination , as detailed at PhosphoSite.
Please quote:
AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12 .
Map on chromosome 9, links to other databases and other names
Map: This gene PTCH1 maps on chromosome 9, at 9q22.3 according to Entrez Gene. In AceView, it covers
74.08 kb , from 98279339 to 98205262 (NCBI 37, August 2010), on the reverse strand.
Links to: manual annotations from
OMIM_155255 ,
OMIM_605462 ,
OMIM_109400 ,
OMIM_610828 ,
GAD ,
KEGG_04340 ,
KEGG_05200 ,
KEGG_05217 ,
PhosphoSite , the
SNP view, gene overviews from
Entrez Gene 5727 ,
GeneCards , expression data from
ECgene ,
UniGene Hs.494538 ,
Hs.638946 , molecular and other annotations from
UCSC , or our
GOLD analysis.
The previous AceView annotation is
here .
Other names: The gene is also known as PTCH1, RP11-435O5.3, PTC, BCNS, HPE7, PTC1, PTCH, NBCCS, PTCH11, FLJ26746 or FLJ42602, LOC5727. It has been described as protein patched homolog 1, PTCH protein +4', PTCH protein -10, PTCH protein +12b, patched homolog 1, OTTHUMP00000021709, OTTHUMP00000021710.
Closest AceView homologs in other species
?
The closest mouse gene , according to BlastP, is the AceView gene
Ptch1 (e=0.0).
The closest C.elegans genes , according to BlastP, are the AceView/WormGenes
ptc-1 (e=3 10
-94 ),
ptc-3 (e=10
-83 ), which may contain interesting functional annotation.
The closest A.thaliana gene , according to BlastP, is the AceView gene
AT4G38350 (e=2 10
-27 ), which may contain interesting functional annotation
PTCH1
Gene expression in 15 primates, 16 tissues, from the NHPRTR project in sFPKM
BAB
SkeletalMuscle
WholeBlood
CHP
Kidney
Liver
Lung
Spleen
CMC
CMM
Cerebellum
HUM
Brain
Colon
Heart
LymphNode
Ovary
Testis
JMI
BoneMarrow
MLM
OWL
PTM
RMC
RMI
Pituitary
SQM
Thymus
MST
SMY
RTL
0.68
5.04
0.89
6.65
1.02
7.64
0.42
2.05
49.7
1.45
8.78
6.21
3.82
8.78
2.90
4.10
8.78
3.10
5.40
49.7
11.6
1.45
0.08
23.2
7.64
7.13
0.96
6.65
2.52
0.39
0.16
0.59
17.6
2.35
1.45
7.64
6.65
6.65
0.45
21.6
5.04
6.65
2.35
3.33
2.70
1.02
0.96
3.10
24.8
6.65
1.26
14.3
7.64
4.39
1.35
4.39
8.19
1.66
12.4
4.10
1.26
0.48
5.40
4.71
0.42
5.04
2.70
18.8
5.79
3.33
1.35
1.10
0.78
2.35
1.18
6.21
0.68
10.1
15.3
4.71
0.59
0.72
1.66
3.82
4.39
4.39
2.05
10.1
8.78
3.33
10.8
2.05
3.57
1.18
6.65
1.02
0.78
1.55
0.63
1.66
8.19
11.6
3.82
1.55
4.71
11.6
2.35
7.13
2.19
7.13
8.78
3.57
3.57
2.35
0.96
0.68
0.55
2.19
5.79
24.8
0.89
2.19
5.04
2.70
4.71
3.33
3.57
2.05
17.6
0.72
3.57
8.78
3.10
3.82
3.10
0.51
3.57
12.4
4.71
5.79
1.91
3.33
1.66
8.19
0.78
1.91
0.72
9.41
3.57
23.2
4.71
3.82
0.59
5.04
Expression
quantiles
None
Weak
1
2
3
4
5
6
7
8
10
20
This gene
All genes
log2 distributions
RNA-seq gene expression profile across 16 selected tissues from the Non-Human Primates Reference Transcriptome Resource (link to
NHPRTR project ).
- Primates:
Apes (
HUM : Human (Illumina BodyMap 2),
CHP : Chimpanzee),
Old World monkeys (
PTM : Pig-Tailed Macaque,
JMI Japanese Macaque,
RMI Rhesus Macaque Indian,
RMC Rhesus Macaque Chinese,
CMM Cynomolgus Macaque Mauritian,
CMC Cynomolgus Macaque Chinese,
BAB Olive Baboon,
SMY Sooty Mangabey);
New World monkeys (
MST common Marmoset,
SQM Squirrel Monkey,
OWL Owl Monkey); and
Lemurs (
MLM Mouse Lemur,
RTL Ring-Tailed Lemur).
- The level for significantly expressed genes is color coded in 8 equal sized bins (light to dark green). Light gray is for weak not-accurately measured expression (2 to 8 reads above intergenic background); dark gray for no expression or no sequence conservation (0 read in gene). The plot to the right shows the distribution of measured expression values in all tissues for
all genes (blue) and for
this gene (green) , in Magic index = log
2 (1000 sFPKM).
You may also examine the strand-specific
genome coverage plots on the experimental AceView/Magic hub at UCSC , by tissue or by species. Tracks may be
slow to load ; please reload if some tracks come up yellow-greenish, and thanks to UCSC for the great work!.
Read more...
About UCSC tracks: you may enjoy the plots for the summed coverage over all primates' libraries (top track), summarizing 3 terabases of stranded RNA-seq. Fragments mapping on the + strand of the genome (from genes on the + strand) are red (or dark), on minus strand blue (or light) and antisense transcribed areas are black or overlaid. The vertical scale for each track is self-adapting. Homozygous SNPs tracks are also presented.
About mapping: Primates body map RNA-seq data were stringently mapped to the human genome using the NCBI Magic pipeline. Normalized results are shown as significant FPKM (sFPKM), which includes corrections on F, K and M, computed from parameters measured directly in each RNA-seq experiment, to render the expression measures more significant and more robust to experimental biases. Only fragments with both reads mapped uniquely and over at least 80+80 bases ending with 8 exact bases on each side of each read, and facing each other in a single site or gene, are included in the computation of the sFPKM/index, in the coverage plots, and in the determination of homozygous SNPs (minimum coverage 10, minimum allele frequency 95%). But be aware that genes whose sequence evolved to become too distant from Human cannot be measured well, this bias can be appreciated in the per-species coverage plots at UCSC.
About libraries: For non-human primates, total RNA libraries used TruSeq, ribozero and the stranded UDG protocol. The human 2010 libraries used the polyA selected non-stranded protocol, with short reads (50, 75 or 50+50 bases); furthermore the insert lengths are larger in human than in the non-human primates (average insert size 187 bp in non-human primates versus 232 bp in human). These protocol differences may impact expression measures for the non polyadenylated genes (or genes with shorter or occasional polyA tails), for the pseudogenes or close gene families (specificity is reduced in humans due to shorter reads), and for the very short genes.
Complete gene on genome diagram:
Compact gene diagram
Gene PTCH1
5'
3'
encoded on minus strand of chromosome 9 from 98,279,339 to 98,205,262
4636
8154
12250
9937
10334
15760
14360
15950
a
[NM]
19
8154
12250
9937
10334
15760
14360
15950
b
[NM]
2
8154
12250
9937
10334
15760
14360
15950
c
[NM]
167
8154
12250
9937
10334
15760
14360
15950
d
[NM]
949
8154
12250
9937
10334
15760
14360
15950
e
[NM]
3
8154
12250
9937
10334
15760
14360
15950
f
[NM]
617
8154
12250
9937
10334
15760
14360
15950
g
[NM]
8154
17
9937
4747
4887
15760
14360
h
3
12250
621
10334
i
617
8154
12250
k
u-u
va-u
j
6
12250
o
r
9
l
8154
4
m
71
vb
15760
n
90
12250
p
8154
12250
q
s
159
t
10kb
0
407 bp exon
407 bp exon
1561 bp [gt-ag] intron
2 GenBank accessions
4634 RNA-seq supporting reads
239 UHR pooled cells
1294 Brain
68 Blood
2952 Neuroblastoma
81 Other
(also 781 Primates bodymap)
193 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
1360 bp [gt-ag] intron
21 GenBank accessions
12340 RNA-seq supporting reads
745 UHR pooled cells
3169 Brain
1188 Blood
7076 Neuroblastoma
162 Other
(also 2392 Primates bodymap)
199 bp exon
299 bp [gt-ag] intron
21 GenBank accessions
15620 RNA-seq supporting reads
860 UHR pooled cells
3721 Brain
1794 Blood
8971 Neuroblastoma
274 Other
(also 3548 Primates bodymap)
122 bp exon
821 bp [gt-ag] intron
12 GenBank accessions
14469 RNA-seq supporting reads
929 UHR pooled cells
3591 Brain
1318 Blood
8360 Neuroblastoma
271 Other
(also 3539 Primates bodymap)
148 bp exon
813 bp [gt-ag] intron
16 GenBank accessions
16116 RNA-seq supporting reads
1015 UHR pooled cells
4083 Brain
1048 Blood
9680 Neuroblastoma
290 Other
(also 3232 Primates bodymap)
132 bp exon
352 bp [gt-ag] intron
15 GenBank accessions
9922 RNA-seq supporting reads
566 UHR pooled cells
2405 Brain
791 Blood
6021 Neuroblastoma
139 Other
(also 1209 Primates bodymap)
156 bp exon
689 bp [gt-ag] intron
15 GenBank accessions
12396 RNA-seq supporting reads
794 UHR pooled cells
3193 Brain
640 Blood
7556 Neuroblastoma
213 Other
(also 1452 Primates bodymap)
99 bp exon
599 bp [gt-ag] intron
18 GenBank accessions
14116 RNA-seq supporting reads
934 UHR pooled cells
3596 Brain
961 Blood
8364 Neuroblastoma
261 Other
(also 2496 Primates bodymap)
126 bp exon
6102 bp [gt-ag] intron
13 GenBank accessions
10321 RNA-seq supporting reads
1006 UHR pooled cells
1022 Brain
646 Blood
7409 Neuroblastoma
238 Other
(also 1152 Primates bodymap)
119 bp exon
659 bp [gt-ag] intron
15 GenBank accessions
15944 RNA-seq supporting reads
998 UHR pooled cells
4140 Brain
591 Blood
9839 Neuroblastoma
376 Other
(also 1906 Primates bodymap)
403 bp exon
1325 bp [gt-ag] intron
12 GenBank accessions
15748 RNA-seq supporting reads
1038 UHR pooled cells
4225 Brain
613 Blood
9593 Neuroblastoma
279 Other
(also 1941 Primates bodymap)
310 bp exon
5117 bp [gt-ag] intron
13 GenBank accessions
19466 RNA-seq supporting reads
1427 UHR pooled cells
5482 Brain
687 Blood
11528 Neuroblastoma
342 Other
(also 2437 Primates bodymap)
143 bp exon
2072 bp [gt-ag] intron
13 GenBank accessions
14347 RNA-seq supporting reads
990 UHR pooled cells
3768 Brain
418 Blood
8892 Neuroblastoma
279 Other
(also 1343 Primates bodymap)
184 bp exon
1306 bp [gt-ag] intron
16 GenBank accessions
21025 RNA-seq supporting reads
1468 UHR pooled cells
5209 Brain
684 Blood
13357 Neuroblastoma
307 Other
(also 2889 Primates bodymap)
281 bp exon
1599 bp [gt-ag] intron
16 GenBank accessions
15091 RNA-seq supporting reads
1056 UHR pooled cells
3983 Brain
340 Blood
9423 Neuroblastoma
289 Other
(also 849 Primates bodymap)
138 bp exon
2655 bp [gt-ag] intron
14 GenBank accessions
18874 RNA-seq supporting reads
1305 UHR pooled cells
4699 Brain
279 Blood
12229 Neuroblastoma
362 Other
(also 941 Primates bodymap)
143 bp exon
3537 bp [gt-ag] intron
13 GenBank accessions
15937 RNA-seq supporting reads
1543 UHR pooled cells
2710 Brain
264 Blood
11018 Neuroblastoma
402 Other
(also 1096 Primates bodymap)
100 bp exon
517 bp [gt-ag] intron
12 GenBank accessions
17046 RNA-seq supporting reads
1320 UHR pooled cells
3577 Brain
205 Blood
11597 Neuroblastoma
347 Other
(also 1215 Primates bodymap)
255 bp exon
1617 bp [gt-ag] intron
17 GenBank accessions
22267 RNA-seq supporting reads
1479 UHR pooled cells
4524 Brain
448 Blood
15433 Neuroblastoma
383 Other
(also 1475 Primates bodymap)
541 bp exon
541 bp exon
519 bp [gt-ag] intron
18 GenBank accessions
24173 RNA-seq supporting reads
1802 UHR pooled cells
5795 Brain
527 Blood
15627 Neuroblastoma
422 Other
(also 1649 Primates bodymap)
5 accessions, NM_000264.3
some from anaplastic oligodendroglioma (seen 2 times)
brain (2), lung (once)
Validated 3' end, 1 accession
3410 bp exon
343 bp exon
343 bp exon
45 bp uORF
343 bp exon
343 bp exon
10023 bp [gc-ag] intron
3 GenBank accessions
16 RNA-seq supporting reads
2 Brain
14 Neuroblastoma
(also 1 Primates bodymap)
193 bp exon
193 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
92 bp exon
1360 bp [gt-ag] intron
21 GenBank accessions
12340 RNA-seq supporting reads
745 UHR pooled cells
3169 Brain
1188 Blood
7076 Neuroblastoma
162 Other
(also 2392 Primates bodymap)
199 bp exon
199 bp exon
299 bp [gt-ag] intron
21 GenBank accessions
15620 RNA-seq supporting reads
860 UHR pooled cells
3721 Brain
1794 Blood
8971 Neuroblastoma
274 Other
(also 3548 Primates bodymap)
122 bp exon
122 bp exon
821 bp [gt-ag] intron
12 GenBank accessions
14469 RNA-seq supporting reads
929 UHR pooled cells
3591 Brain
1318 Blood
8360 Neuroblastoma
271 Other
(also 3539 Primates bodymap)
148 bp exon
148 bp exon
813 bp [gt-ag] intron
16 GenBank accessions
16116 RNA-seq supporting reads
1015 UHR pooled cells
4083 Brain
1048 Blood
9680 Neuroblastoma
290 Other
(also 3232 Primates bodymap)
132 bp exon
132 bp exon
352 bp [gt-ag] intron
15 GenBank accessions
9922 RNA-seq supporting reads
566 UHR pooled cells
2405 Brain
791 Blood
6021 Neuroblastoma
139 Other
(also 1209 Primates bodymap)
156 bp exon
156 bp exon
689 bp [gt-ag] intron
15 GenBank accessions
12396 RNA-seq supporting reads
794 UHR pooled cells
3193 Brain
640 Blood
7556 Neuroblastoma
213 Other
(also 1452 Primates bodymap)
99 bp exon
99 bp exon
599 bp [gt-ag] intron
18 GenBank accessions
14116 RNA-seq supporting reads
934 UHR pooled cells
3596 Brain
961 Blood
8364 Neuroblastoma
261 Other
(also 2496 Primates bodymap)
126 bp exon
126 bp exon
6102 bp [gt-ag] intron
13 GenBank accessions
10321 RNA-seq supporting reads
1006 UHR pooled cells
1022 Brain
646 Blood
7409 Neuroblastoma
238 Other
(also 1152 Primates bodymap)
119 bp exon
119 bp exon
659 bp [gt-ag] intron
15 GenBank accessions
15944 RNA-seq supporting reads
998 UHR pooled cells
4140 Brain
591 Blood
9839 Neuroblastoma
376 Other
(also 1906 Primates bodymap)
403 bp exon
403 bp exon
1325 bp [gt-ag] intron
12 GenBank accessions
15748 RNA-seq supporting reads
1038 UHR pooled cells
4225 Brain
613 Blood
9593 Neuroblastoma
279 Other
(also 1941 Primates bodymap)
310 bp exon
310 bp exon
5117 bp [gt-ag] intron
13 GenBank accessions
19466 RNA-seq supporting reads
1427 UHR pooled cells
5482 Brain
687 Blood
11528 Neuroblastoma
342 Other
(also 2437 Primates bodymap)
143 bp exon
143 bp exon
2072 bp [gt-ag] intron
13 GenBank accessions
14347 RNA-seq supporting reads
990 UHR pooled cells
3768 Brain
418 Blood
8892 Neuroblastoma
279 Other
(also 1343 Primates bodymap)
184 bp exon
184 bp exon
1306 bp [gt-ag] intron
16 GenBank accessions
21025 RNA-seq supporting reads
1468 UHR pooled cells
5209 Brain
684 Blood
13357 Neuroblastoma
307 Other
(also 2889 Primates bodymap)
281 bp exon
281 bp exon
1599 bp [gt-ag] intron
16 GenBank accessions
15091 RNA-seq supporting reads
1056 UHR pooled cells
3983 Brain
340 Blood
9423 Neuroblastoma
289 Other
(also 849 Primates bodymap)
138 bp exon
138 bp exon
2655 bp [gt-ag] intron
14 GenBank accessions
18874 RNA-seq supporting reads
1305 UHR pooled cells
4699 Brain
279 Blood
12229 Neuroblastoma
362 Other
(also 941 Primates bodymap)
143 bp exon
143 bp exon
3537 bp [gt-ag] intron
13 GenBank accessions
15937 RNA-seq supporting reads
1543 UHR pooled cells
2710 Brain
264 Blood
11018 Neuroblastoma
402 Other
(also 1096 Primates bodymap)
100 bp exon
100 bp exon
517 bp [gt-ag] intron
12 GenBank accessions
17046 RNA-seq supporting reads
1320 UHR pooled cells
3577 Brain
205 Blood
11597 Neuroblastoma
347 Other
(also 1215 Primates bodymap)
255 bp exon
255 bp exon
1617 bp [gt-ag] intron
17 GenBank accessions
22267 RNA-seq supporting reads
1479 UHR pooled cells
4524 Brain
448 Blood
15433 Neuroblastoma
383 Other
(also 1475 Primates bodymap)
541 bp exon
541 bp exon
541 bp exon
519 bp [gt-ag] intron
18 GenBank accessions
24173 RNA-seq supporting reads
1802 UHR pooled cells
5795 Brain
527 Blood
15627 Neuroblastoma
422 Other
(also 1649 Primates bodymap)
67 accessions, NM_001083603.1
some from brain (seen 8 times)
cerebellum (5), testis (5)
amygdala (3), placenta cot 25-normalized (3)
3410 bp exon
90 bp exon
1351 bp [gt-ag] intron
2 GenBank accessions
193 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
1360 bp [gt-ag] intron
21 GenBank accessions
12340 RNA-seq supporting reads
745 UHR pooled cells
3169 Brain
1188 Blood
7076 Neuroblastoma
162 Other
(also 2392 Primates bodymap)
199 bp exon
299 bp [gt-ag] intron
21 GenBank accessions
15620 RNA-seq supporting reads
860 UHR pooled cells
3721 Brain
1794 Blood
8971 Neuroblastoma
274 Other
(also 3548 Primates bodymap)
122 bp exon
821 bp [gt-ag] intron
12 GenBank accessions
14469 RNA-seq supporting reads
929 UHR pooled cells
3591 Brain
1318 Blood
8360 Neuroblastoma
271 Other
(also 3539 Primates bodymap)
148 bp exon
813 bp [gt-ag] intron
16 GenBank accessions
16116 RNA-seq supporting reads
1015 UHR pooled cells
4083 Brain
1048 Blood
9680 Neuroblastoma
290 Other
(also 3232 Primates bodymap)
132 bp exon
352 bp [gt-ag] intron
15 GenBank accessions
9922 RNA-seq supporting reads
566 UHR pooled cells
2405 Brain
791 Blood
6021 Neuroblastoma
139 Other
(also 1209 Primates bodymap)
156 bp exon
689 bp [gt-ag] intron
15 GenBank accessions
12396 RNA-seq supporting reads
794 UHR pooled cells
3193 Brain
640 Blood
7556 Neuroblastoma
213 Other
(also 1452 Primates bodymap)
99 bp exon
599 bp [gt-ag] intron
18 GenBank accessions
14116 RNA-seq supporting reads
934 UHR pooled cells
3596 Brain
961 Blood
8364 Neuroblastoma
261 Other
(also 2496 Primates bodymap)
126 bp exon
6102 bp [gt-ag] intron
13 GenBank accessions
10321 RNA-seq supporting reads
1006 UHR pooled cells
1022 Brain
646 Blood
7409 Neuroblastoma
238 Other
(also 1152 Primates bodymap)
119 bp exon
659 bp [gt-ag] intron
15 GenBank accessions
15944 RNA-seq supporting reads
998 UHR pooled cells
4140 Brain
591 Blood
9839 Neuroblastoma
376 Other
(also 1906 Primates bodymap)
403 bp exon
1325 bp [gt-ag] intron
12 GenBank accessions
15748 RNA-seq supporting reads
1038 UHR pooled cells
4225 Brain
613 Blood
9593 Neuroblastoma
279 Other
(also 1941 Primates bodymap)
310 bp exon
5117 bp [gt-ag] intron
13 GenBank accessions
19466 RNA-seq supporting reads
1427 UHR pooled cells
5482 Brain
687 Blood
11528 Neuroblastoma
342 Other
(also 2437 Primates bodymap)
143 bp exon
2072 bp [gt-ag] intron
13 GenBank accessions
14347 RNA-seq supporting reads
990 UHR pooled cells
3768 Brain
418 Blood
8892 Neuroblastoma
279 Other
(also 1343 Primates bodymap)
184 bp exon
1306 bp [gt-ag] intron
16 GenBank accessions
21025 RNA-seq supporting reads
1468 UHR pooled cells
5209 Brain
684 Blood
13357 Neuroblastoma
307 Other
(also 2889 Primates bodymap)
281 bp exon
1599 bp [gt-ag] intron
16 GenBank accessions
15091 RNA-seq supporting reads
1056 UHR pooled cells
3983 Brain
340 Blood
9423 Neuroblastoma
289 Other
(also 849 Primates bodymap)
138 bp exon
2655 bp [gt-ag] intron
14 GenBank accessions
18874 RNA-seq supporting reads
1305 UHR pooled cells
4699 Brain
279 Blood
12229 Neuroblastoma
362 Other
(also 941 Primates bodymap)
143 bp exon
3537 bp [gt-ag] intron
13 GenBank accessions
15937 RNA-seq supporting reads
1543 UHR pooled cells
2710 Brain
264 Blood
11018 Neuroblastoma
402 Other
(also 1096 Primates bodymap)
100 bp exon
517 bp [gt-ag] intron
12 GenBank accessions
17046 RNA-seq supporting reads
1320 UHR pooled cells
3577 Brain
205 Blood
11597 Neuroblastoma
347 Other
(also 1215 Primates bodymap)
255 bp exon
1617 bp [gt-ag] intron
17 GenBank accessions
22267 RNA-seq supporting reads
1479 UHR pooled cells
4524 Brain
448 Blood
15433 Neuroblastoma
383 Other
(also 1475 Primates bodymap)
541 bp exon
541 bp exon
519 bp [gt-ag] intron
18 GenBank accessions
24173 RNA-seq supporting reads
1802 UHR pooled cells
5795 Brain
527 Blood
15627 Neuroblastoma
422 Other
(also 1649 Primates bodymap)
2 accessions, NM_001083605.1
Validated 3' end, 1 accession
3410 bp exon
691 bp exon
691 bp exon
21 bp uORF
691 bp exon
691 bp exon
337 bp [gt-ag] intron
2 GenBank accessions
165 RNA-seq supporting reads
27 UHR pooled cells
34 Brain
14 Blood
90 Neuroblastoma
(also 10 Primates bodymap)
193 bp exon
193 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
92 bp exon
1360 bp [gt-ag] intron
21 GenBank accessions
12340 RNA-seq supporting reads
745 UHR pooled cells
3169 Brain
1188 Blood
7076 Neuroblastoma
162 Other
(also 2392 Primates bodymap)
199 bp exon
199 bp exon
299 bp [gt-ag] intron
21 GenBank accessions
15620 RNA-seq supporting reads
860 UHR pooled cells
3721 Brain
1794 Blood
8971 Neuroblastoma
274 Other
(also 3548 Primates bodymap)
122 bp exon
122 bp exon
821 bp [gt-ag] intron
12 GenBank accessions
14469 RNA-seq supporting reads
929 UHR pooled cells
3591 Brain
1318 Blood
8360 Neuroblastoma
271 Other
(also 3539 Primates bodymap)
148 bp exon
148 bp exon
813 bp [gt-ag] intron
16 GenBank accessions
16116 RNA-seq supporting reads
1015 UHR pooled cells
4083 Brain
1048 Blood
9680 Neuroblastoma
290 Other
(also 3232 Primates bodymap)
132 bp exon
132 bp exon
352 bp [gt-ag] intron
15 GenBank accessions
9922 RNA-seq supporting reads
566 UHR pooled cells
2405 Brain
791 Blood
6021 Neuroblastoma
139 Other
(also 1209 Primates bodymap)
156 bp exon
156 bp exon
689 bp [gt-ag] intron
15 GenBank accessions
12396 RNA-seq supporting reads
794 UHR pooled cells
3193 Brain
640 Blood
7556 Neuroblastoma
213 Other
(also 1452 Primates bodymap)
99 bp exon
99 bp exon
599 bp [gt-ag] intron
18 GenBank accessions
14116 RNA-seq supporting reads
934 UHR pooled cells
3596 Brain
961 Blood
8364 Neuroblastoma
261 Other
(also 2496 Primates bodymap)
126 bp exon
126 bp exon
6102 bp [gt-ag] intron
13 GenBank accessions
10321 RNA-seq supporting reads
1006 UHR pooled cells
1022 Brain
646 Blood
7409 Neuroblastoma
238 Other
(also 1152 Primates bodymap)
119 bp exon
119 bp exon
659 bp [gt-ag] intron
15 GenBank accessions
15944 RNA-seq supporting reads
998 UHR pooled cells
4140 Brain
591 Blood
9839 Neuroblastoma
376 Other
(also 1906 Primates bodymap)
403 bp exon
403 bp exon
1325 bp [gt-ag] intron
12 GenBank accessions
15748 RNA-seq supporting reads
1038 UHR pooled cells
4225 Brain
613 Blood
9593 Neuroblastoma
279 Other
(also 1941 Primates bodymap)
310 bp exon
310 bp exon
5117 bp [gt-ag] intron
13 GenBank accessions
19466 RNA-seq supporting reads
1427 UHR pooled cells
5482 Brain
687 Blood
11528 Neuroblastoma
342 Other
(also 2437 Primates bodymap)
143 bp exon
143 bp exon
2072 bp [gt-ag] intron
13 GenBank accessions
14347 RNA-seq supporting reads
990 UHR pooled cells
3768 Brain
418 Blood
8892 Neuroblastoma
279 Other
(also 1343 Primates bodymap)
184 bp exon
184 bp exon
1306 bp [gt-ag] intron
16 GenBank accessions
21025 RNA-seq supporting reads
1468 UHR pooled cells
5209 Brain
684 Blood
13357 Neuroblastoma
307 Other
(also 2889 Primates bodymap)
281 bp exon
281 bp exon
1599 bp [gt-ag] intron
16 GenBank accessions
15091 RNA-seq supporting reads
1056 UHR pooled cells
3983 Brain
340 Blood
9423 Neuroblastoma
289 Other
(also 849 Primates bodymap)
138 bp exon
138 bp exon
2655 bp [gt-ag] intron
14 GenBank accessions
18874 RNA-seq supporting reads
1305 UHR pooled cells
4699 Brain
279 Blood
12229 Neuroblastoma
362 Other
(also 941 Primates bodymap)
143 bp exon
143 bp exon
3537 bp [gt-ag] intron
13 GenBank accessions
15937 RNA-seq supporting reads
1543 UHR pooled cells
2710 Brain
264 Blood
11018 Neuroblastoma
402 Other
(also 1096 Primates bodymap)
100 bp exon
100 bp exon
517 bp [gt-ag] intron
12 GenBank accessions
17046 RNA-seq supporting reads
1320 UHR pooled cells
3577 Brain
205 Blood
11597 Neuroblastoma
347 Other
(also 1215 Primates bodymap)
255 bp exon
255 bp exon
1617 bp [gt-ag] intron
17 GenBank accessions
22267 RNA-seq supporting reads
1479 UHR pooled cells
4524 Brain
448 Blood
15433 Neuroblastoma
383 Other
(also 1475 Primates bodymap)
541 bp exon
541 bp exon
541 bp exon
519 bp [gt-ag] intron
18 GenBank accessions
24173 RNA-seq supporting reads
1802 UHR pooled cells
5795 Brain
527 Blood
15627 Neuroblastoma
422 Other
(also 1649 Primates bodymap)
5 accessions, NM_001083607.1
some from brain (seen 2 times)
glioblastoma (pooled) (2)
Validated 3' end, 1 accession
3410 bp exon
189 bp exon
189 bp exon
629 bp [gt-ag] intron
2 GenBank accessions
947 RNA-seq supporting reads
128 UHR pooled cells
171 Brain
328 Blood
314 Neuroblastoma
6 Other
(also 502 Primates bodymap)
193 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
1360 bp [gt-ag] intron
21 GenBank accessions
12340 RNA-seq supporting reads
745 UHR pooled cells
3169 Brain
1188 Blood
7076 Neuroblastoma
162 Other
(also 2392 Primates bodymap)
199 bp exon
299 bp [gt-ag] intron
21 GenBank accessions
15620 RNA-seq supporting reads
860 UHR pooled cells
3721 Brain
1794 Blood
8971 Neuroblastoma
274 Other
(also 3548 Primates bodymap)
122 bp exon
821 bp [gt-ag] intron
12 GenBank accessions
14469 RNA-seq supporting reads
929 UHR pooled cells
3591 Brain
1318 Blood
8360 Neuroblastoma
271 Other
(also 3539 Primates bodymap)
148 bp exon
813 bp [gt-ag] intron
16 GenBank accessions
16116 RNA-seq supporting reads
1015 UHR pooled cells
4083 Brain
1048 Blood
9680 Neuroblastoma
290 Other
(also 3232 Primates bodymap)
132 bp exon
352 bp [gt-ag] intron
15 GenBank accessions
9922 RNA-seq supporting reads
566 UHR pooled cells
2405 Brain
791 Blood
6021 Neuroblastoma
139 Other
(also 1209 Primates bodymap)
156 bp exon
689 bp [gt-ag] intron
15 GenBank accessions
12396 RNA-seq supporting reads
794 UHR pooled cells
3193 Brain
640 Blood
7556 Neuroblastoma
213 Other
(also 1452 Primates bodymap)
99 bp exon
599 bp [gt-ag] intron
18 GenBank accessions
14116 RNA-seq supporting reads
934 UHR pooled cells
3596 Brain
961 Blood
8364 Neuroblastoma
261 Other
(also 2496 Primates bodymap)
126 bp exon
6102 bp [gt-ag] intron
13 GenBank accessions
10321 RNA-seq supporting reads
1006 UHR pooled cells
1022 Brain
646 Blood
7409 Neuroblastoma
238 Other
(also 1152 Primates bodymap)
119 bp exon
659 bp [gt-ag] intron
15 GenBank accessions
15944 RNA-seq supporting reads
998 UHR pooled cells
4140 Brain
591 Blood
9839 Neuroblastoma
376 Other
(also 1906 Primates bodymap)
403 bp exon
1325 bp [gt-ag] intron
12 GenBank accessions
15748 RNA-seq supporting reads
1038 UHR pooled cells
4225 Brain
613 Blood
9593 Neuroblastoma
279 Other
(also 1941 Primates bodymap)
310 bp exon
5117 bp [gt-ag] intron
13 GenBank accessions
19466 RNA-seq supporting reads
1427 UHR pooled cells
5482 Brain
687 Blood
11528 Neuroblastoma
342 Other
(also 2437 Primates bodymap)
143 bp exon
2072 bp [gt-ag] intron
13 GenBank accessions
14347 RNA-seq supporting reads
990 UHR pooled cells
3768 Brain
418 Blood
8892 Neuroblastoma
279 Other
(also 1343 Primates bodymap)
184 bp exon
1306 bp [gt-ag] intron
16 GenBank accessions
21025 RNA-seq supporting reads
1468 UHR pooled cells
5209 Brain
684 Blood
13357 Neuroblastoma
307 Other
(also 2889 Primates bodymap)
281 bp exon
1599 bp [gt-ag] intron
16 GenBank accessions
15091 RNA-seq supporting reads
1056 UHR pooled cells
3983 Brain
340 Blood
9423 Neuroblastoma
289 Other
(also 849 Primates bodymap)
138 bp exon
2655 bp [gt-ag] intron
14 GenBank accessions
18874 RNA-seq supporting reads
1305 UHR pooled cells
4699 Brain
279 Blood
12229 Neuroblastoma
362 Other
(also 941 Primates bodymap)
143 bp exon
3537 bp [gt-ag] intron
13 GenBank accessions
15937 RNA-seq supporting reads
1543 UHR pooled cells
2710 Brain
264 Blood
11018 Neuroblastoma
402 Other
(also 1096 Primates bodymap)
100 bp exon
517 bp [gt-ag] intron
12 GenBank accessions
17046 RNA-seq supporting reads
1320 UHR pooled cells
3577 Brain
205 Blood
11597 Neuroblastoma
347 Other
(also 1215 Primates bodymap)
255 bp exon
1617 bp [gt-ag] intron
17 GenBank accessions
22267 RNA-seq supporting reads
1479 UHR pooled cells
4524 Brain
448 Blood
15433 Neuroblastoma
383 Other
(also 1475 Primates bodymap)
541 bp exon
541 bp exon
519 bp [gt-ag] intron
18 GenBank accessions
24173 RNA-seq supporting reads
1802 UHR pooled cells
5795 Brain
527 Blood
15627 Neuroblastoma
422 Other
(also 1649 Primates bodymap)
2 accessions, NM_001083606.1
Validated 3' end, 1 accession
3410 bp exon
107 bp exon
107 bp exon
1334 bp [gt-ag] intron
2 GenBank accessions
1 RNA-seq supporting reads
1 Neuroblastoma
193 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
1360 bp [gt-ag] intron
21 GenBank accessions
12340 RNA-seq supporting reads
745 UHR pooled cells
3169 Brain
1188 Blood
7076 Neuroblastoma
162 Other
(also 2392 Primates bodymap)
199 bp exon
299 bp [gt-ag] intron
21 GenBank accessions
15620 RNA-seq supporting reads
860 UHR pooled cells
3721 Brain
1794 Blood
8971 Neuroblastoma
274 Other
(also 3548 Primates bodymap)
122 bp exon
821 bp [gt-ag] intron
12 GenBank accessions
14469 RNA-seq supporting reads
929 UHR pooled cells
3591 Brain
1318 Blood
8360 Neuroblastoma
271 Other
(also 3539 Primates bodymap)
148 bp exon
813 bp [gt-ag] intron
16 GenBank accessions
16116 RNA-seq supporting reads
1015 UHR pooled cells
4083 Brain
1048 Blood
9680 Neuroblastoma
290 Other
(also 3232 Primates bodymap)
132 bp exon
352 bp [gt-ag] intron
15 GenBank accessions
9922 RNA-seq supporting reads
566 UHR pooled cells
2405 Brain
791 Blood
6021 Neuroblastoma
139 Other
(also 1209 Primates bodymap)
156 bp exon
689 bp [gt-ag] intron
15 GenBank accessions
12396 RNA-seq supporting reads
794 UHR pooled cells
3193 Brain
640 Blood
7556 Neuroblastoma
213 Other
(also 1452 Primates bodymap)
99 bp exon
599 bp [gt-ag] intron
18 GenBank accessions
14116 RNA-seq supporting reads
934 UHR pooled cells
3596 Brain
961 Blood
8364 Neuroblastoma
261 Other
(also 2496 Primates bodymap)
126 bp exon
6102 bp [gt-ag] intron
13 GenBank accessions
10321 RNA-seq supporting reads
1006 UHR pooled cells
1022 Brain
646 Blood
7409 Neuroblastoma
238 Other
(also 1152 Primates bodymap)
119 bp exon
659 bp [gt-ag] intron
15 GenBank accessions
15944 RNA-seq supporting reads
998 UHR pooled cells
4140 Brain
591 Blood
9839 Neuroblastoma
376 Other
(also 1906 Primates bodymap)
403 bp exon
1325 bp [gt-ag] intron
12 GenBank accessions
15748 RNA-seq supporting reads
1038 UHR pooled cells
4225 Brain
613 Blood
9593 Neuroblastoma
279 Other
(also 1941 Primates bodymap)
310 bp exon
5117 bp [gt-ag] intron
13 GenBank accessions
19466 RNA-seq supporting reads
1427 UHR pooled cells
5482 Brain
687 Blood
11528 Neuroblastoma
342 Other
(also 2437 Primates bodymap)
143 bp exon
2072 bp [gt-ag] intron
13 GenBank accessions
14347 RNA-seq supporting reads
990 UHR pooled cells
3768 Brain
418 Blood
8892 Neuroblastoma
279 Other
(also 1343 Primates bodymap)
184 bp exon
1306 bp [gt-ag] intron
16 GenBank accessions
21025 RNA-seq supporting reads
1468 UHR pooled cells
5209 Brain
684 Blood
13357 Neuroblastoma
307 Other
(also 2889 Primates bodymap)
281 bp exon
1599 bp [gt-ag] intron
16 GenBank accessions
15091 RNA-seq supporting reads
1056 UHR pooled cells
3983 Brain
340 Blood
9423 Neuroblastoma
289 Other
(also 849 Primates bodymap)
138 bp exon
2655 bp [gt-ag] intron
14 GenBank accessions
18874 RNA-seq supporting reads
1305 UHR pooled cells
4699 Brain
279 Blood
12229 Neuroblastoma
362 Other
(also 941 Primates bodymap)
143 bp exon
3537 bp [gt-ag] intron
13 GenBank accessions
15937 RNA-seq supporting reads
1543 UHR pooled cells
2710 Brain
264 Blood
11018 Neuroblastoma
402 Other
(also 1096 Primates bodymap)
100 bp exon
517 bp [gt-ag] intron
12 GenBank accessions
17046 RNA-seq supporting reads
1320 UHR pooled cells
3577 Brain
205 Blood
11597 Neuroblastoma
347 Other
(also 1215 Primates bodymap)
255 bp exon
1617 bp [gt-ag] intron
17 GenBank accessions
22267 RNA-seq supporting reads
1479 UHR pooled cells
4524 Brain
448 Blood
15433 Neuroblastoma
383 Other
(also 1475 Primates bodymap)
541 bp exon
541 bp exon
519 bp [gt-ag] intron
18 GenBank accessions
24173 RNA-seq supporting reads
1802 UHR pooled cells
5795 Brain
527 Blood
15627 Neuroblastoma
422 Other
(also 1649 Primates bodymap)
2 accessions, NM_001083604.1
Validated 3' end, 1 accession
3410 bp exon
497 bp exon
497 bp exon
45 bp uORF
497 bp exon
497 bp exon
9869 bp [gt-ag] intron
7 GenBank accessions
610 RNA-seq supporting reads
7 UHR pooled cells
58 Brain
2 Blood
525 Neuroblastoma
18 Other
(also 108 Primates bodymap)
193 bp exon
193 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
92 bp exon
1360 bp [gt-ag] intron
21 GenBank accessions
12340 RNA-seq supporting reads
745 UHR pooled cells
3169 Brain
1188 Blood
7076 Neuroblastoma
162 Other
(also 2392 Primates bodymap)
199 bp exon
199 bp exon
299 bp [gt-ag] intron
21 GenBank accessions
15620 RNA-seq supporting reads
860 UHR pooled cells
3721 Brain
1794 Blood
8971 Neuroblastoma
274 Other
(also 3548 Primates bodymap)
122 bp exon
122 bp exon
821 bp [gt-ag] intron
12 GenBank accessions
14469 RNA-seq supporting reads
929 UHR pooled cells
3591 Brain
1318 Blood
8360 Neuroblastoma
271 Other
(also 3539 Primates bodymap)
148 bp exon
148 bp exon
813 bp [gt-ag] intron
16 GenBank accessions
16116 RNA-seq supporting reads
1015 UHR pooled cells
4083 Brain
1048 Blood
9680 Neuroblastoma
290 Other
(also 3232 Primates bodymap)
132 bp exon
132 bp exon
352 bp [gt-ag] intron
15 GenBank accessions
9922 RNA-seq supporting reads
566 UHR pooled cells
2405 Brain
791 Blood
6021 Neuroblastoma
139 Other
(also 1209 Primates bodymap)
156 bp exon
156 bp exon
689 bp [gt-ag] intron
15 GenBank accessions
12396 RNA-seq supporting reads
794 UHR pooled cells
3193 Brain
640 Blood
7556 Neuroblastoma
213 Other
(also 1452 Primates bodymap)
99 bp exon
99 bp exon
599 bp [gt-ag] intron
18 GenBank accessions
14116 RNA-seq supporting reads
934 UHR pooled cells
3596 Brain
961 Blood
8364 Neuroblastoma
261 Other
(also 2496 Primates bodymap)
126 bp exon
126 bp exon
6102 bp [gt-ag] intron
13 GenBank accessions
10321 RNA-seq supporting reads
1006 UHR pooled cells
1022 Brain
646 Blood
7409 Neuroblastoma
238 Other
(also 1152 Primates bodymap)
119 bp exon
119 bp exon
659 bp [gt-ag] intron
15 GenBank accessions
15944 RNA-seq supporting reads
998 UHR pooled cells
4140 Brain
591 Blood
9839 Neuroblastoma
376 Other
(also 1906 Primates bodymap)
403 bp exon
403 bp exon
1325 bp [gt-ag] intron
12 GenBank accessions
15748 RNA-seq supporting reads
1038 UHR pooled cells
4225 Brain
613 Blood
9593 Neuroblastoma
279 Other
(also 1941 Primates bodymap)
310 bp exon
310 bp exon
5117 bp [gt-ag] intron
13 GenBank accessions
19466 RNA-seq supporting reads
1427 UHR pooled cells
5482 Brain
687 Blood
11528 Neuroblastoma
342 Other
(also 2437 Primates bodymap)
143 bp exon
143 bp exon
2072 bp [gt-ag] intron
13 GenBank accessions
14347 RNA-seq supporting reads
990 UHR pooled cells
3768 Brain
418 Blood
8892 Neuroblastoma
279 Other
(also 1343 Primates bodymap)
184 bp exon
184 bp exon
1306 bp [gt-ag] intron
16 GenBank accessions
21025 RNA-seq supporting reads
1468 UHR pooled cells
5209 Brain
684 Blood
13357 Neuroblastoma
307 Other
(also 2889 Primates bodymap)
281 bp exon
281 bp exon
1599 bp [gt-ag] intron
16 GenBank accessions
15091 RNA-seq supporting reads
1056 UHR pooled cells
3983 Brain
340 Blood
9423 Neuroblastoma
289 Other
(also 849 Primates bodymap)
138 bp exon
138 bp exon
2655 bp [gt-ag] intron
14 GenBank accessions
18874 RNA-seq supporting reads
1305 UHR pooled cells
4699 Brain
279 Blood
12229 Neuroblastoma
362 Other
(also 941 Primates bodymap)
143 bp exon
143 bp exon
3537 bp [gt-ag] intron
13 GenBank accessions
15937 RNA-seq supporting reads
1543 UHR pooled cells
2710 Brain
264 Blood
11018 Neuroblastoma
402 Other
(also 1096 Primates bodymap)
100 bp exon
100 bp exon
517 bp [gt-ag] intron
12 GenBank accessions
17046 RNA-seq supporting reads
1320 UHR pooled cells
3577 Brain
205 Blood
11597 Neuroblastoma
347 Other
(also 1215 Primates bodymap)
255 bp exon
255 bp exon
1617 bp [gt-ag] intron
17 GenBank accessions
22267 RNA-seq supporting reads
1479 UHR pooled cells
4524 Brain
448 Blood
15433 Neuroblastoma
383 Other
(also 1475 Primates bodymap)
541 bp exon
541 bp exon
541 bp exon
519 bp [gt-ag] intron
18 GenBank accessions
24173 RNA-seq supporting reads
1802 UHR pooled cells
5795 Brain
527 Blood
15627 Neuroblastoma
422 Other
(also 1649 Primates bodymap)
2 accessions, NM_001083602.1
Validated 3' end, 1 accession
3410 bp exon
193 bp exon
193 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
190 bp exon
5096 bp [gt-ag] intron
1 GenBank accession
16 RNA-seq supporting reads
2 UHR pooled cells
4 Brain
1 Blood
9 Neuroblastoma
(also 15 Primates bodymap)
199 bp exon
199 bp exon
299 bp [gt-ag] intron
21 GenBank accessions
15620 RNA-seq supporting reads
860 UHR pooled cells
3721 Brain
1794 Blood
8971 Neuroblastoma
274 Other
(also 3548 Primates bodymap)
122 bp exon
122 bp exon
821 bp [gt-ag] intron
12 GenBank accessions
14469 RNA-seq supporting reads
929 UHR pooled cells
3591 Brain
1318 Blood
8360 Neuroblastoma
271 Other
(also 3539 Primates bodymap)
148 bp exon
148 bp exon
813 bp [gt-ag] intron
16 GenBank accessions
16116 RNA-seq supporting reads
1015 UHR pooled cells
4083 Brain
1048 Blood
9680 Neuroblastoma
290 Other
(also 3232 Primates bodymap)
132 bp exon
132 bp exon
352 bp [gt-ag] intron
15 GenBank accessions
9922 RNA-seq supporting reads
566 UHR pooled cells
2405 Brain
791 Blood
6021 Neuroblastoma
139 Other
(also 1209 Primates bodymap)
156 bp exon
156 bp exon
689 bp [gt-ag] intron
15 GenBank accessions
12396 RNA-seq supporting reads
794 UHR pooled cells
3193 Brain
640 Blood
7556 Neuroblastoma
213 Other
(also 1452 Primates bodymap)
99 bp exon
99 bp exon
599 bp [gt-ag] intron
18 GenBank accessions
14116 RNA-seq supporting reads
934 UHR pooled cells
3596 Brain
961 Blood
8364 Neuroblastoma
261 Other
(also 2496 Primates bodymap)
126 bp exon
126 bp exon
1890 bp [gt-ag] intron
3 GenBank accessions
4744 RNA-seq supporting reads
2 UHR pooled cells
3109 Brain
3 Blood
1611 Neuroblastoma
19 Other
(also 267 Primates bodymap)
132 bp exon
132 bp exon
132 bp exon
4080 bp [gt-ag] intron
2 GenBank accessions
4885 RNA-seq supporting reads
5 UHR pooled cells
3251 Brain
9 Blood
1576 Neuroblastoma
44 Other
(also 211 Primates bodymap)
119 bp exon
119 bp exon
119 bp exon
659 bp [gt-ag] intron
15 GenBank accessions
15944 RNA-seq supporting reads
998 UHR pooled cells
4140 Brain
591 Blood
9839 Neuroblastoma
376 Other
(also 1906 Primates bodymap)
403 bp exon
403 bp exon
1325 bp [gt-ag] intron
12 GenBank accessions
15748 RNA-seq supporting reads
1038 UHR pooled cells
4225 Brain
613 Blood
9593 Neuroblastoma
279 Other
(also 1941 Primates bodymap)
310 bp exon
310 bp exon
5117 bp [gt-ag] intron
13 GenBank accessions
19466 RNA-seq supporting reads
1427 UHR pooled cells
5482 Brain
687 Blood
11528 Neuroblastoma
342 Other
(also 2437 Primates bodymap)
143 bp exon
143 bp exon
2072 bp [gt-ag] intron
13 GenBank accessions
14347 RNA-seq supporting reads
990 UHR pooled cells
3768 Brain
418 Blood
8892 Neuroblastoma
279 Other
(also 1343 Primates bodymap)
184 bp exon
184 bp exon
1306 bp [gt-ag] intron
16 GenBank accessions
21025 RNA-seq supporting reads
1468 UHR pooled cells
5209 Brain
684 Blood
13357 Neuroblastoma
307 Other
(also 2889 Primates bodymap)
281 bp exon
281 bp exon
1599 bp [gt-ag] intron
16 GenBank accessions
15091 RNA-seq supporting reads
1056 UHR pooled cells
3983 Brain
340 Blood
9423 Neuroblastoma
289 Other
(also 849 Primates bodymap)
138 bp exon
138 bp exon
2655 bp [gt-ag] intron
14 GenBank accessions
18874 RNA-seq supporting reads
1305 UHR pooled cells
4699 Brain
279 Blood
12229 Neuroblastoma
362 Other
(also 941 Primates bodymap)
3780 bp exon
3780 bp exon
3780 bp exon
517 bp [gt-ag] intron
12 GenBank accessions
17046 RNA-seq supporting reads
1320 UHR pooled cells
3577 Brain
205 Blood
11597 Neuroblastoma
347 Other
(also 1215 Primates bodymap)
255 bp exon
1617 bp [gt-ag] intron
17 GenBank accessions
22267 RNA-seq supporting reads
1479 UHR pooled cells
4524 Brain
448 Blood
15433 Neuroblastoma
383 Other
(also 1475 Primates bodymap)
541 bp exon
519 bp [gt-ag] intron
18 GenBank accessions
24173 RNA-seq supporting reads
1802 UHR pooled cells
5795 Brain
527 Blood
15627 Neuroblastoma
422 Other
(also 1649 Primates bodymap)
34 accessions, some from adenocarcinoma (seen 8 times)
colon (8), brain (4)
cerebellum (2), cochlea (2)
Validated 3' end, 4 accessions
Validated 3' end, 1 accession
3412 bp exon
46 bp exon
17425 bp [gt-ag] intron
1 GenBank accession
2 RNA-seq supporting reads
2 Brain
190 bp exon
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
1360 bp [gt-ag] intron
21 GenBank accessions
12340 RNA-seq supporting reads
745 UHR pooled cells
3169 Brain
1188 Blood
7076 Neuroblastoma
162 Other
(also 2392 Primates bodymap)
199 bp exon
299 bp [gt-ag] intron
21 GenBank accessions
15620 RNA-seq supporting reads
860 UHR pooled cells
3721 Brain
1794 Blood
8971 Neuroblastoma
274 Other
(also 3548 Primates bodymap)
122 bp exon
821 bp [gt-ag] intron
12 GenBank accessions
14469 RNA-seq supporting reads
929 UHR pooled cells
3591 Brain
1318 Blood
8360 Neuroblastoma
271 Other
(also 3539 Primates bodymap)
148 bp exon
813 bp [gt-ag] intron
16 GenBank accessions
16116 RNA-seq supporting reads
1015 UHR pooled cells
4083 Brain
1048 Blood
9680 Neuroblastoma
290 Other
(also 3232 Primates bodymap)
132 bp exon
1197 bp [gt-ag] intron
2 GenBank accessions
619 RNA-seq supporting reads
71 UHR pooled cells
116 Brain
45 Blood
365 Neuroblastoma
22 Other
(also 36 Primates bodymap)
99 bp exon
599 bp [gt-ag] intron
18 GenBank accessions
14116 RNA-seq supporting reads
934 UHR pooled cells
3596 Brain
961 Blood
8364 Neuroblastoma
261 Other
(also 2496 Primates bodymap)
126 bp exon
6102 bp [gt-ag] intron
13 GenBank accessions
10321 RNA-seq supporting reads
1006 UHR pooled cells
1022 Brain
646 Blood
7409 Neuroblastoma
238 Other
(also 1152 Primates bodymap)
119 bp exon
659 bp [gt-ag] intron
15 GenBank accessions
15944 RNA-seq supporting reads
998 UHR pooled cells
4140 Brain
591 Blood
9839 Neuroblastoma
376 Other
(also 1906 Primates bodymap)
216 bp exon
3 accessions, some from lung (seen once)
small cell carcinoma (once)
testis (once)
capped 5' end, 1 accession
216 bp exon
589 bp exon
589 bp exon
45 bp uORF
589 bp exon
589 bp exon
9869 bp [gt-ag] intron
7 GenBank accessions
610 RNA-seq supporting reads
7 UHR pooled cells
58 Brain
2 Blood
525 Neuroblastoma
18 Other
(also 108 Primates bodymap)
193 bp exon
193 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
212 bp exon
212 bp exon
3 accessions, some from brain (seen once)
brain, adult medulla (once)
medulla (once)
Validated 3' end, 1 accession
212 bp exon
548 bp exon
548 bp exon
1 accession from eye
548 bp exon
517 bp exon
517 bp exon
2 accessions, some from testis normal (seen 2 times)
517 bp exon
859 bp exon
859 bp exon
1617 bp [gt-ag] intron
17 GenBank accessions
22267 RNA-seq supporting reads
1479 UHR pooled cells
4524 Brain
448 Blood
15433 Neuroblastoma
383 Other
(also 1475 Primates bodymap)
541 bp exon
541 bp exon
519 bp [gt-ag] intron
18 GenBank accessions
24173 RNA-seq supporting reads
1802 UHR pooled cells
5795 Brain
527 Blood
15627 Neuroblastoma
422 Other
(also 1649 Primates bodymap)
4 accessions, some from cerebellum (seen 4 times)
capped 5' end, 3 accessions
Validated 3' end, 1 accession
2980 bp exon
36 bp exon
36 bp exon
30748 bp [gc-ag] intron
1 GenBank accession
5 RNA-seq supporting reads
2 Brain
3 Neuroblastoma
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
70 bp exon
1 accession
70 bp exon
131 bp exon
659 bp [gt-ag] intron
15 GenBank accessions
15944 RNA-seq supporting reads
998 UHR pooled cells
4140 Brain
591 Blood
9839 Neuroblastoma
376 Other
(also 1906 Primates bodymap)
53 bp exon
1 accession
53 bp exon
52 bp exon
52 bp exon
119 bp [gt-ag] intron
1 GenBank accession
8 RNA-seq supporting reads
7 Brain
1 Neuroblastoma
184 bp exon
1306 bp [gt-ag] intron
16 GenBank accessions
21025 RNA-seq supporting reads
1468 UHR pooled cells
5209 Brain
684 Blood
13357 Neuroblastoma
307 Other
(also 2889 Primates bodymap)
281 bp exon
1599 bp [gt-ag] intron
16 GenBank accessions
15091 RNA-seq supporting reads
1056 UHR pooled cells
3983 Brain
340 Blood
9423 Neuroblastoma
289 Other
(also 849 Primates bodymap)
7 bp exon
1 accession from cerebellum
capped 5' end, 1 accession
7 bp exon
193 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
3446 bp [gt-ag] intron
1 GenBank accession
3 RNA-seq supporting reads
1 UHR pooled cells
2 Brain
105 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
92 bp exon
1360 bp [gt-ag] intron
21 GenBank accessions
12340 RNA-seq supporting reads
745 UHR pooled cells
3169 Brain
1188 Blood
7076 Neuroblastoma
162 Other
(also 2392 Primates bodymap)
1 accession
50 bp exon
190 bp exon
190 bp exon
190 bp exon
30594 bp [gt-ag] intron
1 GenBank accession
70 RNA-seq supporting reads
1 UHR pooled cells
4 Brain
1 Blood
63 Neuroblastoma
1 Other
(also 9 Primates bodymap)
1 accession
Validated 3' end, 1 accession
51 bp exon
438 bp exon
438 bp exon
1325 bp [gt-ag] intron
12 GenBank accessions
15748 RNA-seq supporting reads
1038 UHR pooled cells
4225 Brain
613 Blood
9593 Neuroblastoma
279 Other
(also 1941 Primates bodymap)
139 bp exon
1 accession from thymus
capped 5' end, 1 accession
139 bp exon
139 bp exon
8387 bp [gt-ag] intron
1 GenBank accession
89 RNA-seq supporting reads
4 UHR pooled cells
2 Brain
66 Blood
17 Neuroblastoma
190 bp exon
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
1360 bp [gt-ag] intron
21 GenBank accessions
12340 RNA-seq supporting reads
745 UHR pooled cells
3169 Brain
1188 Blood
7076 Neuroblastoma
162 Other
(also 2392 Primates bodymap)
45 bp exon
1 accession from thalamus
capped 5' end, 1 accession
45 bp exon
204 bp exon
20532 bp [gt-ag] intron
24 GenBank accessions
8130 RNA-seq supporting reads
588 UHR pooled cells
2264 Brain
645 Blood
4448 Neuroblastoma
185 Other
(also 2197 Primates bodymap)
190 bp exon
190 bp exon
3481 bp [gt-ag] intron
28 GenBank accessions
12222 RNA-seq supporting reads
769 UHR pooled cells
3056 Brain
776 Blood
7401 Neuroblastoma
220 Other
(also 2892 Primates bodymap)
70 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
92 bp exon
6 accessions, some from testis (seen once)
capped 5' end, 1 accession
92 bp exon
2176 bp exon
2176 bp exon
93 bp [gt-ag] intron
30 GenBank accessions
10182 RNA-seq supporting reads
651 UHR pooled cells
2539 Brain
975 Blood
5842 Neuroblastoma
175 Other
(also 2553 Primates bodymap)
212 bp exon
2 accessions, some from nervous normal (seen once)
prostate (once)
Validated 3' end, 1 accession
212 bp exon
258 bp exon
258 bp exon
25818 bp [gt-ag] intron
2 GenBank accessions
157 RNA-seq supporting reads
4 UHR pooled cells
47 Brain
7 Blood
98 Neuroblastoma
1 Other
(also 9 Primates bodymap)
199 bp exon
199 bp exon
299 bp [gt-ag] intron
21 GenBank accessions
15620 RNA-seq supporting reads
860 UHR pooled cells
3721 Brain
1794 Blood
8971 Neuroblastoma
274 Other
(also 3548 Primates bodymap)
3 accessions, some from testis (seen once)
capped 5' end, 1 accession
233 bp exon
Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
Read more...
Mouse over the ending of each transcript gives tissues from which the supporting cDNAs were extracted. Details on tissue of origin for each intron and exon is available from the
intron and exons table .
Click on any transcript to open the specific mRNA page, to see the exact cDNA clone support and eventual SNPs and to get details on tissues, sequences, mRNA and protein annotations. Proteins supported by a single continuous cDNA sequence lead to underlining the name/ending of the variant. Names not underlined result from cDNA concatenation in the coding region and should be experimentally checked.
Introns are depicted by broken lines; the height of the top of each intron reflects the relative number of clones supporting this intron.
]^[ A pink broken line denotes an intron with standard boundaries (gt-ag or gc-ag) that is exactly supported (i.e. a cDNA sequence exactly matches the genome over 16 bp, 8 on both sides of the intron).
] ^ ] A blue broken line denotes non-standard introns, exactly supported, but with non-standard at-ac or any other boundaries.
]-[ Pink and
] - ] blue straight lines represent 'fuzzy' introns of the standard and non-standard types respectively, those introns do not follow the 16 bp rule. Black straight lines ]-[denote gaps in the alignments.
Exons: Wide filled pink areas represent putative protein coding regions, narrow empty pink boxes represent the 5'UTR (on the left) and 3' UTR (on the right). Flags identify validated endings: cap site on the 5' side, polyadenylation site on the 3' side. Filled flags correspond to frequent events while empty flags have lesser supporting cDNAs (yet all are validated); at the 3' side, black flags are associated to the main AATAAA signal,
blue flags to any single letter variant of the main . More explanations are given in the
gene help file
Sequences: click on the numbers to get the DNA
Gene neighbors and Navigator on chromosome 9q22.3
R
R
R
D
C
I
R
P
PTCH1
10
20kb
0
bartarby, 5 accessions
jorlar, 4 accessions
batarby, 1 accession
butarby, 1 accession
bosobu, 1 accession
beetarby, 1 accession
beytarby, 4 accessions
jeelar, 2 accessions
boytarby, 1 accession
dytarby, 1 accession
gleygar, 13 accessions
jeylar, 5 accessions
dotarby, 1 accession
dawtarby, 1 accession
kuplawbu, 3 accessions
swawsubu, 2 accessions
kosiro, 1 accession
varzu, 1 accession
swortoby, 1 accession
floygar, 3 accessions
jolar, 2 accessions
bytarby, 1 accession
koplawbu, 1 accession
karplawbu, 1 accession
sweesubu, 1 accession
pustor, 2 accessions
bawtarby, 1 accession
glargar, 2 accessions
bertarby, 1 accession
bortarby, 1 accession
fleetawby, 1 accession
datarby, 1 accession
flertawby, 1 accession
gloygar, 2 accessions
dartarby, 2 accessions
deetarby, 1 accession
joylar, 2 accessions
kalar, 1 accession
jarlar, 3 accessions, 2 variants
PTCH1, 151 accessions
23 variants
ZOOM OUT
D :disease,
C :conserved,
I :interactions,
R :regulation,
P :publications
Read more...
G
R
R
R
R
C9orf102
C
R
P
RPS26P37
D
C
I
R
P
FANCC
R
D
C
I
R
P
PTCH1
D
P
PSMA7P
R
P
C9orf130
100kb
0
C9orf3, 432 accessions
46 variants
LOC643342, 1 accession
bartarby, 5 accessions
jorlar, 4 accessions
blarley, 3 accessions
2 variants
koysawby, 3 accessions
2 variants
C9orf102, 182 accessions
21 variants
bleygar, 4 accessions
skeetoby, 1 accession
garlar, 14 accessions
lystor, 1 accession
slutoby, 3 accessions
slawtoby, 10 accessions
sleytoby, 1 accession
gawlar, 3 accessions
makiro, 2 accessions
cheeshee, 2 accessions
smytoby, 1 accession
chawtawby, 4 accessions
2 variants
foplawbu, 1 accession
chershee, 7 accessions
smartoby, 1 accession
farplawbu, 1 accession
smeetoby, 1 accession
smertoby, 1 accession
fawplawbu, 2 accessions
smeytoby, 1 accession
mukiro, 1 accession
rimemu, 11 accessions
gerlar, 3 accessions
metira, 12 accessions
shashee, 1 accession
ferplawbu, 1 accession
snytoby, 1 accession
snutoby, 1 accession
snotoby, 1 accession
snartoby, 2 accessions
shushee, 3 accessions
sneetoby, 1 accession
sneytoby, 2 accessions
mekiro, 1 accession
geylar, 1 accession
spatoby, 1 accession
spoysubu, 1 accession
spertoby, 1 accession
sheetawby, 1 accession
gaplawbu, 3 accessions
RPS26P37, 12 accessions
guplawbu, 2 accessions
spoytoby, 1 accession
larstor, 2 accessions
shoshee, 3 accessions
2 variants
garplawbu, 3 accessions
mustor, 1 accession
stosubu, 1 accession
juplawbu, 2 accessions
stertoby, 2 accessions
steytoby, 1 accession
steysubu, 1 accession
jeeplawbu, 1 accession
swatoby, 3 accessions
swartoby, 1 accession
stoysubu, 1 accession
jerplawbu, 1 accession
swertoby, 1 accession
batarby, 1 accession
butarby, 1 accession
bosobu, 1 accession
beetarby, 1 accession
beytarby, 4 accessions
jeelar, 2 accessions
boytarby, 1 accession
dytarby, 1 accession
gleygar, 13 accessions
jeylar, 5 accessions
dotarby, 1 accession
dawtarby, 1 accession
kersawby, 1 accession
bleeley, 4 accessions
lersawby, 1 accession
plortawby, 1 accession
koyplawbu, 1 accession
lorsawby, 2 accessions
dysobu, 1 accession
loysawby, 9 accessions
masawby, 2 accessions
narteebo, 1 accession
musawby, 2 accessions
marsawby, 1 accession
dyteeby, 13 accessions
lawplawbu, 5 accessions
smeesubu, 1 accession
zutawby, 4 accessions
skeytoby, 1 accession
skortoby, 1 accession
slatoby, 1 accession
lostor, 1 accession
slytoby, 2 accessions
slotoby, 2 accessions
slertoby, 2 accessions
slortoby, 1 accession
ramemu, 2 accessions
smatoby, 2 accessions
mikiro, 2 accessions
smutoby, 1 accession
flergar, 3 accessions
snysubu, 1 accession
sneysubu, 1 accession
smawtoby, 2 accessions
cheyshee, 2 accessions
smortoby, 1 accession
chorshee, 1 accession
smoytoby, 2 accessions
snatoby, 3 accessions
choyshee, 1 accession
feeplawbu, 1 accession
shyshee, 3 accessions
snawtoby, 1 accession
feyplawbu, 1 accession
snertoby, 1 accession
snortoby, 1 accession
snoytoby, 1 accession
moyreyby, 3 accessions
chortawby, 2 accessions
spytoby, 3 accessions
foyplawbu, 2 accessions
speytoby, 1 accession
gyplawbu, 4 accessions
stasubu, 2 accessions
gorlar, 10 accessions
stysubu, 1 accession
nastor, 1 accession
gerplawbu, 1 accession
stytoby, 4 accessions
stusubu, 1 accession
goylar, 7 accessions
nostor, 2 accessions
geyplawbu, 1 accession
nateebo, 1 accession
steesubu, 1 accession
sharshee, 1 accession
shawshee, 5 accessions
japlawbu, 1 accession
startoby, 1 accession
joplawbu, 1 accession
stawtoby, 1 accession
steetoby, 2 accessions
stortoby, 2 accessions
storsubu, 1 accession
swytoby, 2 accessions
flotawby, 2 accessions
swutoby, 1 accession
swotoby, 2 accessions
swawtoby, 1 accession
nyteebo, 1 accession
swarsubu, 1 accession
jorplawbu, 2 accessions
joyplawbu, 4 accessions
kaplawbu, 1 accession
kuplawbu, 3 accessions
swawsubu, 2 accessions
kosiro, 1 accession
varzu, 1 accession
swortoby, 1 accession
floygar, 3 accessions
jolar, 2 accessions
bytarby, 1 accession
koplawbu, 1 accession
karplawbu, 1 accession
sweesubu, 1 accession
pustor, 2 accessions
bawtarby, 1 accession
glargar, 2 accessions
bertarby, 1 accession
bortarby, 1 accession
fleetawby, 1 accession
datarby, 1 accession
flertawby, 1 accession
gloygar, 2 accessions
dartarby, 2 accessions
deetarby, 1 accession
joylar, 2 accessions
kalar, 1 accession
bloley, 2 accessions
keesawby, 1 accession
barsobu, 1 accession
mokiro, 1 accession
hakiro, 1 accession
korsawby, 1 accession
reestor, 2 accessions
lysawby, 1 accession
hikiro, 2 accessions
bersobu, 3 accessions
platawby, 1 accession
leesawby, 1 accession
keyplawbu, 1 accession
plartawby, 1 accession
korplawbu, 2 accessions
boshee, 4 accessions
dasobu, 2 accessions
slytawby, 2 accessions
mysawby, 1 accession
mosawby, 1 accession
FANCC, 175 accessions
18 variants
jarlar, 3 accessions, 2 variants
PTCH1, 151 accessions
23 variants
PSMA7P, 1 accession
C9orf130, 102 accessions
10 variants
ZOOM IN
D :disease,
C :conserved,
I :interactions,
R :regulation,
P :publications
Read more...
Annotated mRNA diagrams
The mRNAs diagrams with the aligned cDNA sequence accessions and their mismatches are available in the mRNA pages accessible from the tab at the top of the page, or here:
In Flash:
.b , .t , .g , .f , .c , .d , .h , .vb , .i , .m , .o , .j , .s , .va-u , .l , .p , .q , .u-u , .r , .a , .k , .e , .n .
or in GIF:
.b , .t , .g , .f , .c , .d , .h , .vb , .i , .m , .o , .j , .s , .va-u , .l , .p , .q , .u-u , .r , .a , .k , .e , .n
Bibliography:   108 articles in PubMed
? Gene Summary
Gene on genome
mRNA: .a , .b , .c , .d , .e , .f , .g , .h , .i , .j , .k , .l , .m , .n , .o , .p , .q , .r , .s , .t , .u-u , .va-u , .vb
Alternative mRNAs features, proteins, introns, exons, sequences
Expression Tissue
Function, regulation, related genes D C I
To
mine knowledge about the gene, please click the
'Gene Summary' or the
'Function, regulation, related genes ' tab at the top of the page. The
'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The
'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To
compare alternative variants , their summarized annotations, predicted proteins, introns and exons, or to access any sequence, click the
'Alternative mRNAs features' tab. To see a
specific mRNA variant diagram, sequence and annotation, click the variant name in the
'mRNA' tab. To examine
expression data from all cDNAs clustered in this gene by AceView, click the
'Expression tissue' .
If you know more about this gene, or found errors, please
share your knowledge. Thank you !