Conserved Protein Domain Family
ChlamPMP_M

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pfam07548: ChlamPMP_M 
Chlamydia polymorphic membrane protein middle domain
This family contains several Chlamydia polymorphic membrane proteins. Chlamydia pneumoniae is an obligate intracellular bacterium and a common human pathogen causing infection of the upper and lower respiratory tract. This domain is found between the beta-helical repeats (pfam02415) and the C-terminal pfam03797. This domain is excised subsequent to secretion.
Statistics
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PSSM-Id: 311484
View PSSM: pfam07548
Aligned: 8 rows
Threshold Bit Score: 136.124
Threshold Setting Gi: 14195039
Created: 22-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14195036 1202 GSLVLKPNTELHVIS--FEQKeGSSLVMTPGSVLSNQ-------------------------------------TVADGA 1242
gi 14195034  499 GTLSIENGAHLIVQS--FKQT-GGRISLSPGSSLALYtmnsf----------------------------fhgnISSKEP 547
gi 7404420   489 GTLAIEDDAELEIFNipFTQNpTSLLALGSGATLTVG---------------------------------------KHGK 529
gi 7387984   460 GFLCIEDHAQLTVNR--FTQT-GGVVSLGNGAVLSCYkng-------------------------------tgdSASNAS 505
gi 14195038  520 GRIVLREKAKLSVNS--LSQT-GGSLYMEAGSTLDFVtpqp-----------------------------pqqpPAANQL 567
gi 14195037 1000 GSLELLNGATLCSYG--FKQDaGAKLVLAAGAKLKILdsgtpvqqghaiskpeaeiesssepegahslwiaknaQTTVPM 1077
gi 14195035 1226 GTLVLKEKTELHVVS--FEQKeGSKLIMKPGAVLSNQ-------------------------------------NIANGA 1266
gi 14195039  515 GELVVTEGATLTTGT--ITAT-SGRVTLGSGASLSAVag----------------------------------aANNNYT 557
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14195036 1243 LVINNMTIDLSSVEKNgiaegniftppelriidtttggsggtpstdsesnqnsddteeqnnndasnqgesangssspava 1322
gi 14195034  548 LEINGLSFGVDISPSN---------------------------------------------------------------- 563
gi 7404420   530 LNITNLGVILPIILKEgksppcirvnp----------------------------------------------------- 556
gi 7387984   506 ITLKHIGLNLSSILKSgaeipll--------------------------------------------------------- 528
gi 14195038  568 ITLSNLHLSLSSLLANnavtnppt-------------------------------------------------------- 591
gi 14195037 1078 VDIHTISVDLASFSSSqqe------------------------------------------------------------- 1096
gi 14195035 1267 LVINGLTIDLSSMGTPqageifsppelrivattssasg---------------------------------------gsg 1307
gi 14195039  558 CTVSKLGIDLESFLTPn--------------------------------------------------------------- 574
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14195036 1323 aahtsrtrnfaaaatatptTTPTATTtTSNQVILGG-EIKL--IDPNGTFFQNPAL-RSDQQISLLVL----------PT 1388
gi 14195034  564 -------------------LQAEIRA-GNAPLRLSG-SPSI--HDPEGLFYENRDTaASPYQMEILLTsdkivdiskfTT 620
gi 7404420   557 --------qdmtqntgtgqTPSSTSSiSTPMIIFNG-RLSIv-DENYESVYDSMDLsRGKAEQLILSIet-------tND 619
gi 7387984   529 -------------wveptnNSNNYTAdTAATFSLSDvKLSLi-DDYGNSPYESTDLtHALSSQPMLSIse-------aSD 587
gi 14195038  592 ------------nppaqdsHPAIIGStTAGSVTISG-PIFF--EDLDDTAYDRYDWlGSNQKIDVLKLqlgtqpsanaPS 656
gi 14195037 1097 -----------------gtVEAPQVIvPGGSYVRSG-ELNLelVNTTGTGYENHALlKNEAKVPLMSFvasgdeasaeIS 1158
gi 14195035 1308 vsssiptnpkrisaaapsgSAATTPTmSENKVFLTG-DLTL--IDPNGNFYQNPML-GSDLDVPLIKL----------PT 1373
gi 14195039  575 -------------------YKTAILGaDGTVTVNSGsTLDLv-MESEAEVYDN-PLfVGSLTIPFVTL----------SS 623
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 14195036 1389 DSSKMqaqkiv--ltgdiAPQKGYTGTLTLDPDQL-------------------QNGTISVLWKF 1432
gi 14195034  621 DSLVT-------------NKQSGFQGAWHFSWQPNtin--------------ntKQKILRASWLP 658
gi 7404420   620 GQLDSnwqssl-ntsllsPPHYGYQGLWTPNWITT----------------------TYTITLNN 661
gi 7387984   588 NQLQSenidf----sglnVPHYGWQGLWTWGWAKTqdpepassatitdpqkanrFHRTLLLTWLp 648
gi 14195038  657 DLTLGn-----------eMPKYGYQGSWKLAWDPNta---------------nnGPYTLKATWTK 695
gi 14195037 1159 NLSVSdlqihv-vtpeieEDTYGHMGDWSea---------------------kiQDGTLVISWNP 1201
gi 14195035 1374 NTSDVqvydlt--lsgdlFPQKGYMGTWTLDSNPQ--------------------TGKLQARWTF 1416
gi 14195039  624 SSASNgvtknsvtindadAAHYGYQGSWSADWTKPplapdak------gmvppntNNTLYLTWRP 682
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