Conserved Protein Domain Family
BRF1

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pfam07741: BRF1 
Brf1-like TBP-binding domain
This region covers both the Brf homology II and III regions. This region is involved in binding TATA binding protein.
Statistics
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PSSM-Id: 311606
View PSSM: pfam07741
Aligned: 161 rows
Threshold Bit Score: 50.209
Threshold Setting Gi: 124450497
Created: 21-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74631204   448 DDLDDS-ELDHFLLTEDEYKLKERLWTGLNHDFI----V---A-QEKKRLKQETDELTGntsgA-----NRK---KR--- 507
gi 124470772  335 SEIDEQ----EYILNEQEKANKQIVWSALNKEYI----YdieLkNQKKKAQQEKNLLSgnk------qqTQK---AR--- 394
gi 124450497  335 SESDEQ----EYILSEQEKACKQLVWQTMYKEYI----YdkmN-RNQKQDKQQKNLQSgnk------qqNQK---PK--- 393
gi 74951637   427 DDEDDIaMFKEMILPENERKMKMILWDEVTKDIM----PkvyRrQMERKRREQLGQNV-------------K---KR--- 483
gi 74981224   614 SDSYDS-EIENIILSEKERKIKMLIWDDVMKGCM----PnisK-NMKRQKKRQNTDIN-----------NSK---NK--- 670
gi 74864060   644 SDVYDS-EIENIILSEKEREMKMLIWDDMMKNHL----PhlsK-QLKKHKKRNHNDNNknk------dtNIK---KK--- 705
gi 156083907  418 DDEDDErEFSKMILSPEEKEAKTLLWDEVTKDIMpevwR---R-QAERKRKEALGKTV-------------K---KR--- 474
gi 820688630  564 ddesdeeeIRHMFLSESEKRAKALIWDELTKDVMplvhR---R-LKEKKLREREMMVNPs---K-----RKRlqnTR--- 628
gi 221059469  738 SDFYDS-EIENIILSEKERKRKMLIWDDMMKSYF----PqyyK-QFKKQKKKRSSYHTDl---V-----GAD---KSkkk 800
gi 1041811226 684 SDFYDS-EIENIILSEKERKRKMLIWDDMMKSYF----PqyyK-QFKKQKKKRSSYHTDl--vGadkskKKK---KK--- 749
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74631204   508 ----RQGKNSGVEGidgdfvnemgindaltgigvdeatGEPLTAADSAKRMLSK--Ks--FSKKINYATLGDLFD 574
gi 124470772  395 ----KQAKVEKs----------------------------fPTPQESVAKNYEN--Dg------INPQAVKNLFS 429
gi 124450497  394 ----KQVNVKQs----------------------------fATPQESVTNNYQN--Dg------INPQAVQNLFS 428
gi 74951637   484 ----KYVRRVYsey------------------------peaQDAVESARMALER--HakgFMNHVNKDVFKSLLS 528
gi 74981224   671 ----IPNNKQNvdn-----------------------pqdQLSTGDSVIKALEK--SnklLPKKINYDVLKSLFS 716
gi 74864060   706 ----QNTFEDYsq---------------------------vQSTGESVLKALGK--SdknLPNKINYDVLQSLFT 747
gi 156083907  475 ----KYCRKTYSDY------------------------PEAQNAAESTRMALER--HakhFSNRMNQEFLDSIla 519
gi 820688630  629 ----RGRFGSDVGS------------------------TPAASAAESVRLALQMngRs--IVGRINDDALNSLFG 673
gi 221059469  801 kkkeQEQEQNDHHP------------------------LDEQTTGESVIMALEKsdKs--MSTKMNYDVLKSLFS 849
gi 1041811226 750 ----EQEQEQNdhh-----------------------pldEQTTGESVIMALEK--SdksMSTKMNYDVLKSLFS 795
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