Conserved Protein Domain Family
HCNGP

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pfam07818: HCNGP 
HCNGP-like protein
This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP. This protein is localized to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Statistics
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PSSM-Id: 336824
View PSSM: pfam07818
Aligned: 95 rows
Threshold Bit Score: 79.8729
Threshold Setting Gi: 74862547
Created: 20-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74856171   193 IPEAPKdSqvDFGLKEKIIRYH-KMKQD-GISINQALRNSSSFKNPSVIEKLISFCEIDE-LGSNYPLSQFNPHSYPLDD 269
gi 74880461   166 IFYLPE-NkySEILNKKIDE-LsKLYEI-NLTINKNIINSNEYKNPGILEKIMEMFDI-DvYSSNYPPHIYNPHD----F 237
gi 74862547   138 IFNISE-NeySDILNTKIEE-LsKLYEL-NLTINKNIINSNEYKNPCILEKIMEIFQI-DvYSSNYPLHIYNPKF----F 209
gi 313238568   81 LPPAPA-GkiDPNSRNQYLKIM-DGYKK-GMNINKQIKSAKSYRNPSIYSKLIDYFNIEE-GGSNFPKDVFDPVKLKQED 156
gi 1084307318 194 LPSEPT-GhcSMVLQERVERAVrRMRLDiSYDPNRAIQDNKAFRNPSIYEKLIDFLKIDE-KGTNFSTDIYDPYRWTPQS 271
gi 674573439  164 LPPEPK-ElcSMQLQNTVENTLrRMQHDiGFDPNSVIQDNKAFRNPSIYKKLISFLDIDE-KGTNFSPDVFNPYRWDANS 241
gi 674590665  163 LPPEPS-EmcSLELQNKVETAIrRMQHDiSFDPNRMIQDNKSFRNPSIYKKLISFLGIDE-KGSNFSKEVYDPYRWDANS 240
gi 901893430  198 VFFLPP-NeySDCLNQKIEE-LsKLYEI-NLTINKNIINSNEYKNPCILEKIMQIFQI-DvYSSNYPLNIYNPHD----F 269
gi 330797460  184 LPPPVN-GraDPILEDKIIKYH-KMRED-GISINQSLRESQSFRNPSILEKLIAFCEISE-MGSNYKLSEYDPNGFKPDE 259
gi 281203267  229 edgkgenNdiDEHLREKIIKLH-KMKQE-GLNFNDSLRNSIAFNNPLILEKLISFCEIKE-NGSNLPMFYFNPDATKPDE 305
                          90
                  ....*....|....*...
gi 74856171   270 ---YYKPLNEKQRKMDEK 284
gi 74880461   238 ---LSVDLFNEKENTTDK 252
gi 74862547   210 ---SSLDLFNERSQENIQ 224
gi 313238568  157 skhHYRELSKLQNQMEEK 174
gi 1084307318 272 ---YYEELAKVQNREIDR 286
gi 674573439  242 ---FYDKLGEIQNREVER 256
gi 674590665  241 ---YYDKLAEIQNREVER 255
gi 901893430  270 ---LSIDLFNEKGEETDQ 284
gi 330797460  260 ---FYEVLNENQRKMDDK 274
gi 281203267  306 ---YYDKIEAKQREMEEK 320
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