5DTC


Conserved Protein Domain Family
NLE

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pfam08154: NLE 
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NLE (NUC135) domain
This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated yeast ribosome biogenesis protein YTM1.
Statistics
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PSSM-Id: 336937
View PSSM: pfam08154
Aligned: 216 rows
Threshold Bit Score: 30.5356
Threshold Setting Gi: 748496471
Created: 27-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5DTC_A         4 VKIRFFTREKDELLhVQDTPMYAPISLKRYGLSEIVNHLLG--------------SEKPVP--FDFLIE-GEL-LRTSLH 65
gi 124454613  22 VFVTLFNPy-gEEA---QKSLELSVNTTKEELQQILQSLVKte--------------edQV--YTFFHN--NIeLVDTLN 79
gi 121986178  31 IYIQFKNAe-gEKV---DNILQVPLTTKAKELEAMINEILQnde---------ekL-------YTFFYG--THeIKTSID 88
gi 74987019   12 ILIQFVNHe-nKST---GPVINVPLSITKDNLDELINDLKKksdnfie--------ddsedvnYSFMIN-DKLpLKNNLY 78
gi 449707425   4 IQIRLINGELPNS--EPSQVFEIPEETNTKELNALVNKLNKt-------------eEEPFP--YSFYTD-GIQ-ITDNIp 64
gi 471227391  25 IFIKLKNPEGEEI----GDKLDLPILTKTSELEQIVNSFLe--------------nDEPQL--YSFYYE-TQE-IKTSLS 82
gi 221056648  15 ILIQFVNHe-nKST---GPVINVPLSITKENLDQLINDLNAknensiqdddqqenIS------YSFMIN-DKLaIKNNLY 83
gi 156099139  15 ILIQFVNHe-nKST---GPVINVPLSITKDNLDELINDLKAkndhpiqdddhqslN-------YSFMIN-DKLpIKNNLY 82
gi 401410830  50 lVIQFCDHq-dNLL---GSQMAVPLSIHRVQLEDLVNKLLLeepsee------dederkIRkeFSLTIDnNRIeITGSLQ 119
gi 675129482  33 VVIQFCDHq-dNLL---GTQLAVPLSMHREQLEDLVNQLLLeeptee------dedekkVRkeFSLTIDdNRIeITDSLQ 102

                 ...
5DTC_A        66 DYL 68
gi 124454613  80 QLi 82
gi 121986178  89 DFa 91
gi 74987019   79 ESI 81
gi 449707425  65 nkg 67
gi 471227391  83 EFL 85
gi 221056648  84 DTI 86
gi 156099139  83 DAI 85
gi 401410830 120 EAf 122
gi 675129482 103 EAf 105
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