Conserved Protein Domain Family
NLE

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pfam08154: NLE 
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NLE (NUC135) domain
This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated yeast ribosome biogenesis protein YTM1.
Statistics
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PSSM-Id: 311879
View PSSM: pfam08154
Aligned: 222 rows
Threshold Bit Score: 55.5772
Threshold Setting Gi: 298711422
Created: 26-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5DTC_A          4 VKIRFFTREKDELLhvqDTPMYAPISLKRYGLSEIVNHLLGs--------------EKPVP--FDFLIE-GEL-LRTSLH 65
gi 124454613   22 VFVTLFNPy-gEEA---QKSLELSVNTTKEELQQILQSLVKte--------------edQV--YTFFHN--NIeLVDTLN 79
gi 121986178   31 IYIQFKNAe-gEKV---DNILQVPLTTKAKELEAMINEILQnde----------------eklYTFFYG--THeIKTSID 88
15_pfamImport   1 IIAQLVTDt-gDAL---AETLEIPEDTTGADLQEVLRTFRAtdp-------------ddVPikYSFFIG--TTeVRGSLK 61
76_pfamImport   1 -VIQFCDHq-dNLL---GSQMAVPLSIHRVQLEDLVNKLLLeepsee------dederkIRkeFSLTIDnNRIeITGSLQ 69
gi 75015902    17 ILIQFVNHe-nVTT---GPVINVPLSITKDNLDELINNLKRknedlgeqeesedinY------YSFMIN-DKLpIKNSLY 85
gi 74987019    12 ILIQFVNHe-nKST---GPVINVPLSITKDNLDELINDLKKksdnfie--------ddsedvnYSFMIN-DKLpLKNNLY 78
11_pfamImport   1 ILIQFVNHe-nKST---GPVINVPLSITKDNLDELINDLKAkndhpiqd-------ddhqslnYSFMIN-DKLpIKNNLY 68
21_pfamImport   1 ILIQFVNHe-nKST---GPVINVPLSITKENLDQLINDLNAknensiqdddqqeniS------YSFMIN-DKLaIKNNLY 69
gi 471227391   25 IFIKLKNPEGEEI----GDKLDLPILTKTSELEQIVNSFLe--------------nDEPQL--YSFYYE-TQE-IKTSLS 82

                  ...
5DTC_A         66 DYL 68
gi 124454613   80 QLi 82
gi 121986178   89 DFa 91
15_pfamImport  62 QAI 64
76_pfamImport  70 EA- 71
gi 75015902    86 EAI 88
gi 74987019    79 ESI 81
11_pfamImport  69 DAI 71
21_pfamImport  70 DTI 72
gi 471227391   83 EFL 85
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