Conserved Protein Domain Family
Lipocalin_2

?
pfam08212: Lipocalin_2 
Click on image for an interactive view with Cn3D
Lipocalin-like domain
Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel.
Statistics
?
PSSM-Id: 311915
View PSSM: pfam08212
Aligned: 20 rows
Threshold Bit Score: 164.39
Threshold Setting Gi: 81534619
Created: 26-Jul-2016
Updated: 4-Aug-2016
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2ACO_A        30 FD-AKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDG-GLNVINKGYn--PDrGMWQQSEGKAYFTGAPT-RAALKVS 103
gi 81793608   30 LD-ISRYAGQWHEIAHLPVSFQkKCRSDITASYTLRDDG-LIGVRNGCRv--AD-GSLTQADGVARPVAGH--PGQLQVR 102
gi 81778747   25 LN-LSRYLGKWYELCRLPIKYEdETATDITANYSLNDSV-TVRVDNRCFd--KH-GKPFRAIGEATPVDDA--RSRLKVT 97
gi 81792462   29 LD-LSRYLGTWYEIARLPIRFEdADCTDVSAHYSLDADG-GIRVQNRCFt--AK-GELEEAVGQARAIDET--GARLEVT 101
gi 81620916   38 VE-LDRYLGKWYEVARYDMRFQ-KGCEGVTAEYSRRPDG-LIRVFNTCRqdaVD-GPVRTAEGKAKVVDTAT-NAKLKVS 112
gi 81750101   61 VD-LERYQGKWYQVAAIPQPYTlQCSNDTTAEYEKIDEN-TISVANSCGt--PF-G-PSVIQGKATVRS----DASLKVT 130
gi 81761386   61 ID-LERYKGKWYQVAAIPQPFSlQCSHDVTADYGVIDSD-TISVTNKCGt--FF-G-PSVIEGSAKVVS----NASLKVS 130
gi 81534619   24 IDpARHYSGVWMEVGRTPMRIT-KGCVAATTVYNRVDER-RIAVEDDCRqggVE-GKRRAIKGDGVIEDPGV-NRRLKVS 99
gi 81792249   38 VD-VPRFMGDWYVIAHIPTRPE-RKAFDAVERYALRPDG-RIQTTFTFRkgsFQ-APLKSMHPVGQVAKEGN-GALWSMQ 112
gi 499281149  33 VD-AGHYRGTWLEIGRMPMLLT-DGCVAGYSTYRQGKSAdEVLVEDGCRegtPQ-GKLKTINGVGKIEDFAStKAKMRVR 109
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
2ACO_A       104 FFG-------PFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQ 170
gi 81793608  103 FAPewlswipLVWADYWVIALDPDYQWAVVGEPDRKYLWILSRSPEMPRAQFEQLKATATQMGYDLSPLIVAAP 176
gi 81778747   98 FLPkyirwipFTSGDYWVLKLDPEYKVSLVGSPDRQYLWLLARSPDLAQDTRERYLAEAKRQGFDLTNLIVPRH 171
gi 81792462  102 FLPeglrwipFTKGDYWVMRIDSDYTAALVGSPDRKYLWLLARLPQLDENIAQTYLAHAREQGFDLAPLIHTPH 175
gi 81620916  113 FFGpf-------fGDYWVMDHADDYSWAIVGEGSGRYLWLLSRQPP-SDADRVALTARAKALGYDVGLLRPTKQ 178
gi 81750101  131 FGGvpf-qteEGEPNYRVTYLEDDYSLAIVGSPNRLSGFVLSRTPDLSPEDWTKVRNITEDRGWWSCAFVTVPA 203
gi 81761386  131 FPGipf-qseDNQANYRVTYIEDDYSLAIVGSPSRSSGFILSRTPQLSSDQWSHVRNITEDSGWWPCAFITVPA 203
gi 81534619  100 YLP-------FVTWRYEVLDQDPAGAWFISASPDRRKVFLYTRAPA-SPELLKTMTERARALGY-AGEIEYPAP 164
gi 81792249  113 FLW-------PFKAEYVIAWRDANYTQTIVARSKRDYVWYMARTPQVSDADYQQAVGRIAAMGYDVTQLRRVPQ 179
gi 499281149 110 YPL-------LITFNYWVLYKSPDKSWFISANPSTEDVWVYARSVP-SKAKLNRMMMKVRELGYDVKKLEFPAQ 175
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap