Conserved Protein Domain Family
SYF2

?
pfam08231: SYF2 
SYF2 splicing factor
Proteins in this family are involved in cell cycle progression and pre-mRNA splicing.
Statistics
?
PSSM-Id: 311928
View PSSM: pfam08231
Aligned: 107 rows
Threshold Bit Score: 76.8379
Threshold Setting Gi: 749157321
Created: 26-Jul-2016
Updated: 4-Aug-2016
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74803184   72 GLDYNRVKMLNVSAAEAD-RI-----DKLKAK-K----RNADPGFS-DYEAQTARQYNRLVKAMPPr-DLVKYEEQKEKY 138
gi 75015616  532 NNNNRRDKLYNTSAFHVK-KI-----MHKKNK-K---------KDDtYELENDTNLYKKIKFNFSI--NRKIYDEKKKIH 593
gi 74989001  437 EQAEERNYVYNTSAIKAY-NS-----ISKKKK-K---------KMEaYELDNDINLYKKIKFNFSI--NRKIYDEKKEIY 498
gi 74854197  135 GLDPQKERLKNQIAEEI--KP-----NKKEKK-KdsivKDKSNt---YSDEHVYNSYKKRVKEMEKfhNSEHFKKVVSNE 203
gi 927376757  67 GVNSERLRNLRYTIEQDE-AW-----HAKLEAgKt---AAEDREFQ-NFKQLARQTYTKGLKNLNPl-KSEQYEAQKQIY 135
gi 330791325 136 GLDPEKEKLRNIVADDIK-TK-----KKTGKK-Yd---KD-----S-YTDEHVYKSYKKRVKEMESfhNSEHFKPVVSDS 199
gi 67466483   24 kvDCKKPK---FTKNESTdSWmdmpaNTLKHK-KdindQKGDL------AKQAYSAYERKIRWLNPkdTEKEYQQYKQND 93
gi 281201404 136 GGDPEREKLKNALASDLEnKA-----KKKGNK-KfegvHNKQS------DSHIYNSYKKRVKEMESfrNSEHYKEFVDKD 203
gi 901875389 445 DDGEDPPAIYTTSAAQAK-GA-----SKKKNK-K-----------DlLEVDRDSRFFKKMKFNFSI--NRNLYEEKKKKL 504
gi 221052146 454 dDKEDAPAIYTTSAAQAK-GA-----SKKINK-K-----------ElIEVDRDKRFFKKMKFNFSI--NRNLYDEKKKKM 513
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74803184  139 -GdAFYGGPnvil---qglhKDTPAAIDNMVKDLEGQ-IAKRKKFSRRRTHNDDADIDYINEKNARFNKKLERFYGEHTA 213
gi 75015616  594 gS-NFYNINllnh----entKANEYDKNKVVEFCKKQ-EELRSKMSRKRKEKEGIFKNYINQRNKIYNKKLDRYFNKHTL 667
gi 74989001  499 gK-NFYGNNllih----dntPCSDKDKNRIIEFCKKQ-EELRSKLSRKRTNDNEIFKNYINRRNKIYNKKLDRYFNEHTA 572
gi 74854197  204 dVkesgdsinnnkyeygksiEIPRDNINAMKQELLKN-QENRRSFKRKSFK-EEEDINYINEENRLFNQKVSRAYDKYTV 281
gi 927376757 136 aEmKKEGKSdsei----issLTSREKLNQMVDQLKER-E--TTTVKRRKTAQD--RQNFINDKNKQFNDKLDRHYDEYLS 206
gi 330791325 200 sEsLE--TVeyg-----kssVVPRGNINAMKQELLKN-QEQRNSFKRK-GINDEEDVNYVNESNRIYNKKVSRAYDKYTL 270
gi 67466483   94 qLrqki-----------qsgYVSPEKIDCLQKQLARG-KKEAQRFHRERKE-KSFQRDYINVNNKKFNEHVNQAYDQYTS 160
gi 281201404 204 qInnete--------ygkhgFVPEANVNAMKQELLKHqMERRNNFKKRGTN-PDEDVSWINEQNRVFNKKVSRAYDKYTL 274
gi 901875389 505 gE-SFYGGDllat----dssKCTESDKNKVISFCRKQ-QVVRSKLSRKRQHEDGLFKNYINRRNKMYNRKLDRYFNQHTA 578
gi 221052146 514 gK-SFYGQDllit----dtsKCTERDKNNVISFCRKQ-EMVRSKLSRKRKEDNGVFKNYINKRNKMYNKKLDRYFNQHTA 587

                 ....*..
gi 74803184  214 EIKQNLE 220
gi 75015616  668 EIRNKLE 674
gi 74989001  573 EIRRNLE 579
gi 74854197  282 ETRQNLE 288
gi 927376757 207 DLKESiq 213
gi 330791325 271 ETRQNLE 277
gi 67466483  161 DIKDALE 167
gi 281201404 275 EIRQNLE 281
gi 901875389 579 EIRQNLE 585
gi 221052146 588 EIRQNLE 594
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap