5IY6,5IY6


Conserved Protein Domain Family
TF_Zn_Ribbon

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pfam08271: TF_Zn_Ribbon 
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TFIIB zinc-binding
The transcription factor TFIIB contains a zinc-binding motif near the N-terminus. This domain is involved in the interaction with RNA pol II and TFIIF and plays a crucial role in selecting the transcription initiation site. The domain adopts a zinc ribbon like structure.
Statistics
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PSSM-Id: 336978
View PSSM: pfam08271
Aligned: 60 rows
Threshold Bit Score: 33.8141
Threshold Setting Gi: 81363704
Created: 27-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
5IY6_M        14 TCPNHPD-AI-L-----VEDYRAGDM-ICPEC-GLVVGDRVIDVGSEWRTF 55
gi 74565307    2 VCPKCGS-RDiV-----LLPTN--EY-VCKKC-GYKWPMPQPDYMWIETEV 42
gi 81363704    4 TCPECGA-EL-R-----LENPELGELvVCEDC-GAELEVVGLDPLRLEPAP 46
gi 81342315    6 KCPNCGS-DM-------AFDSETGSL-SCSSC-GRQDNIESLPKENIAARF 46
gi 182701396 114 VCPKCGT-RY-T-----VDEAENNNY-TCEVC-GEVLEPFDNTHRVEKLKR 155
gi 182702114 116 FCPNCNV-RF-T-----FEEAMDYGF-SCPGC-GNMLQEFDNSELIKDLEE 157
gi 74510757  117 VCVN-GH-YR-F-----TFDEATEENfTCPEC-GSKMEFMDNSEIIQEIKD 158
gi 74513637  119 ICPNMCVkVS-------YNDAMELNF-TCPRC-GAMLDYLDCSKAIEKIEE 160
gi 74579501    5 KCPVCGN----------EYDINRSNY-LCDKC-GNILE-VIHENDFVKENF 42
gi 116242812 128 KCPVCSS-TFtDleanqLFDPMTGTF-RCTFChTEVEEDESAMPKKDARTL 176
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