Conserved Protein Domain Family
Topo_Zn_Ribbon

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pfam08272: Topo_Zn_Ribbon 
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Topoisomerase I zinc-ribbon-like
Some Proteobacteria topoisomerase I contain two zinc-ribbon-like domains at the C-terminus that structurally homologous to pfam01396. However, this domain no longer bind zinc. Indeed, only one of the four cysteine residues remains.
Statistics
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PSSM-Id: 311947
View PSSM: pfam08272
Aligned: 66 rows
Threshold Bit Score: 41.0527
Threshold Setting Gi: 81399219
Created: 19-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
1YUA_A        81 GNKTMVrfSRK-TKQQYVSSekDGKATGWSAFYVDGKWVE 119
gi 81399219  761 HLPEIP--CTQdSNAYFVLR--DGASGLFMAASTFPKSRE 796
gi 11135225  753 PFPELL--CKQ-SDAWFVLR--EGISGIFFAANTFPKSRE 787
gi 123064529 765 dLPELE--CTK-SDAHFVLR--DGASGIFMAAHNFPKSRE 799
gi 595641605 831 PLPELP--CEK-SDAYFVLR--DGAAGVFLAANTFPKSRE 865
gi 524010815 753 dMPDLL--CKT-EGSHYVLR--DGAAGLFLAAHNFPKVRE 787
gi 500094292 766 dLPELE--CEQ-SDAHFILR--DGASGIFLAANTFPRSRE 800
gi 502817065 766 HLPDVK--CTK-SDGYFVLR--DGAAGIFMAASTFPKSRE 800
gi 807051309 756 pLPELK--CTK-SDAYFILR--NSEKGIFLAAHNFPKSRE 790
1YUA_A        14 PLPELP--CEK-SDAYFVLR--DGAAGVFLAANTFPKSRE 48
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