1YUA,1YUA


Conserved Protein Domain Family
Topo_Zn_Ribbon

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pfam08272: Topo_Zn_Ribbon 
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Topoisomerase I zinc-ribbon-like
Some Proteobacteria topoisomerase I contain two zinc-ribbon-like domains at the C-terminus that structurally homologous to pfam01396. However, this domain no longer bind zinc. Indeed, only one of the four cysteine residues remains.
Statistics
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PSSM-Id: 336979
View PSSM: pfam08272
Aligned: 63 rows
Threshold Bit Score: 41.8295
Threshold Setting Gi: 11135225
Created: 24-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
1YUA_A        81 GNKTMVrfSRK-TKQQYVSSekDGKATGWSAFYVDGKWVE 119
gi 81399219  761 HLPEIP--CTQdSNAYFVLR--DGASGLFMAASTFPKSRE 796
gi 11135225  753 PFPELL--CKQ-SDAWFVLR--EGISGIFFAANTFPKSRE 787
gi 123064529 765 dLPELE--CTK-SDAHFVLR--DGASGIFMAAHNFPKSRE 799
gi 524010815 753 dMPDLL--CKT-EGSHYVLR--DGAAGLFLAAHNFPKVRE 787
gi 904430242   2 pLPELP--CEK-SDAYFVLR--DGAAGVFLAANTFPKSRE 36
gi 500094292 766 dLPELE--CEQ-SDAHFILR--DGASGIFLAANTFPRSRE 800
gi 493769674 760 PFPELK--CEK-SDAYFVLR--DGASGVFMSAHNFPKSRE 794
gi 502817065 766 HLPDVK--CTK-SDGYFVLR--DGAAGIFMAASTFPKSRE 800
1YUA_A        14 PLPELP--CEK-SDAYFVLR--DGAAGVFLAANTFPKSRE 48
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