Conserved Protein Domain Family
U3_snoRNA_assoc

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pfam08297: U3_snoRNA_assoc 
U3 snoRNA associated
This family of proteins is associated with U3 snoRNA. U3 snoRNA is required for nucleolar processing of pre-18S ribosomal RNA.
Statistics
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PSSM-Id: 311965
View PSSM: pfam08297
Aligned: 68 rows
Threshold Bit Score: 31.8773
Threshold Setting Gi: 213406179
Created: 22-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408360212  222 KLDLAILeaaeveeinSTTEIEEKVDEA-SLDLYTPKGHKivfpnneiPKKRTRSFRKGDFKVSVL-----KETNDP--- 292
gi 67540286   250 LLPDDILnav---------pdVRPPTPPpEFEVFSQKKPTklrf-lekKEKAPKDVRMGDVAIRVL-----DSESSR--- 311
gi 557726823  486 LLPDEILnaa---------pdVRPPTPPpEDEVPEQKKPTklrf-ldkVEKAPKDIKRGGTTVRVL-----DGKKST--- 547
gi 258565217  254 FLPDEILlae---psiRPPTPPRETEK---QPAALRPSGNklrf-ldtIEKKPKDVKLGSMSVRVL-----DGTGSAask 321
gi 225563367  582 LLPDEILnae----ptSNDS--RITRIS-EIVLSSMPKSKkhkf-ldnIEKEPKDIRIGGTSIRVLesteiSDSSRI--- 650
gi 303315195  291 FLPDEILlae----ppVRPPTPPRDVEKpSG--ALKPSGNklrf-ldtVEKKPKDVRLGAMSIRVL-----EDSHSA--- 355
gi 391868768  211 LLPDDILnaa---pvtRPPTPPA------EGINIAHKKPTklrf-lekSEKRPKDVKMGDVTIRVL-----GDIPQKka- 274
gi 525582012  239 LLPDDILnae---pvaRPPTPPAD-----NFGFAIPKKSNklrf-lekTEKPPKDLQVGDVTIRVL-----DAPAVKqss 304
gi 259479473  250 LLPDDILnav---pdvRPPTPPP------EFEVFSQKKPTklrf-lekKEKAPKDVRMGDVAIRVL-----DSESSRkqp 314
gi 239610473  298 LLPDEILnaeptsnhsRIPTPPYEMDSSsLADKMSISKSKklkf-ldkLEKRPKDVRIGGTSIRVL-----ENSGSGglr 371
                          90       100       110
                  ....*....|....*....|....*....|..
gi 408360212  293 -----L---------LAPNYEKKLSQRKRDWI 310
gi 67540286   312 -----Kqpn----taLAPKASKASRGAREAWL 334
gi 557726823  548 -----Av--------LAPKVSKDGRNLRQGWL 566
gi 258565217  322 nsfhnA---------LAPKASKNSRIVRENWM 344
gi 225563367  651 -----S---------LPPKSSKRSRQmgnylv 668
gi 303315195  356 -----AggktdlhnsLPPKASKKGRTIRESWM 382
gi 391868768  275 ---ksA---------LPPKASKSGRISKQTWL 294
gi 525582012  305 ---kpA---------LPPKASKSGRGTREGWL 324
gi 259479473  315 ---ntA---------LAPKASKASRGAREAWL 334
gi 239610473  372 ---gvS---------LPPKASKRSRRARENLL 391
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