Conserved Protein Domain Family
oligo_HPY

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pfam08352: oligo_HPY 
Oligopeptide/dipeptide transporter, C-terminal region
This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Statistics
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PSSM-Id: 312008
View PSSM: pfam08352
Aligned: 40 rows
Threshold Bit Score: 63.5698
Threshold Setting Gi: 81832955
Created: 26-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81832955  221 LERLPSSKLF--DESLHPYTIALARVFPRENRHKD----IVKIKGEAPyrLLHRHDTlhtlhqhdhlehlhlpdsG--CL 292
gi 81831313  247 IEKGKTQNIL--EEAKHPYTSALLQSSTYLNPWKD-------LWGIKE--AEERRS----------------------CP 293
gi 123098052 236 VEFGGIKEIL--HNPKHPYTQKLLSTIPKLKEEQKr---LETIEGIVP--SIQAFHVn-----------------K--CR 289
gi 121695263 228 IEITKTENFLtgKNLLHPYTRALYDALPENEFKLT--------LGHQP--SYTEIPK------------------G--CP 277
gi 81859113  230 VEMGRAQDIL--DTPFHPYTKLLKSSIPVPDPEYEw---DENINLSST--EREEFFAk-----------------G--CK 283
gi 496535607 492 aECAKTRDLC--RDPWHPYTKALLDSVMPPDPLKA-------RKQKVP--AVHEGKSe----------------gG--CP 542
gi 655460556 232 VEMGKTDLVI--NNMLHPYTELLFNSVPIPDPAKKm--nFELDASEVP--SLINSPA------------------G--CP 285
gi 500264994 236 VEKGTSKEVI--TRPIHPYTKVLISSSPIADPELArnreIEQLRSYDP--PVRGPETk-----------------N--CP 292
gi 938547036  54 VEKGTKDQIF--NNPRHPYTQALLSATPRLNPDDRr--eRIKLTGELP--SPLNPPP------------------G--CA 107
gi 195944718 279 VETGSRDALC--APPYHPYSHLLVSSAPELRAGWLddaaERCHRPLVP--IGEREHE------------------AelCP 336
                         90
                 ....*....|...
gi 81832955  293 YAPRCTQALPE-C 304
gi 81831313  294 FYERCTQKSSE-C 305
gi 123098052 290 FANRCNKKLDI-C 301
gi 121695263 278 YNENCPYKTEE-C 289
gi 81859113  284 FASRCPEVMSI-C 295
gi 496535607 543 YFGSCGYKMEM-C 554
gi 655460556 286 FFDRCHLRLKE-C 297
gi 500264994 293 FSHACNYFVDK-C 304
gi 938547036 108 FNARCRRRFGP-C 119
gi 195944718 337 FLSRCAMRVDGvC 349
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