Conserved Protein Domain Family
KfrA_N

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pfam11740: KfrA_N 
Plasmid replication region DNA-binding N-term
The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning.
Statistics
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PSSM-Id: 432038
Aligned: 80 rows
Threshold Bit Score: 34.9636
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEF26803          8 SADQIRATVLAMLAEGSEAhpsagaiapvtrerfrravSVRRLRARLGAGDPAVLSRALNAIEAELVQAGLTQvalpGLP 87 
jgi:Ppro_3811     6 SYEMVAGACEKLEREGLKI-------------------TGRSVLTVT-GGSLATVLGHIKRWRLNKESAPSLVp--lEIP 63 
HuoZJU:KKY_3888  11 TLEKVKDAVERLHREGRKA-------------------TANAVISAIGGGSKPTVLKHLQTLRKPAEAADD------QMP 65 
jgi:Ajs_1887     22 KTLYREVCALLFFRHGITP-------------------TASKLYQHVRKGSMSAPAEALAKFWEELRDKARVEidhpDLP 82 
CBW77137         24 relSLHACKRLFFDHAVRP-------------------TLANVRELTGVGSASDIPKDIEFFWERVRDMSKVRidagVLP 84 
jgi:Bphy_4155    25 qelSLHACKRLFFDLGIRP-------------------SMAAVRDLTQTGSASDIPKDIDSFWERIRSASRVRvgagAIP 85 
WP_012732899     26 qdlslHACKRLFFDLGIRP-------------------SAANVRELTQTGSAGDIPKDIDFFWERIRSASKVKldggHLP 86  Burkholderia...
Q63PE4           25 qdlslHACKRLFFDLGIRP-------------------STANVRELTQTGSASDIPKDIDHFWERIRSASKVRlegaALP 85  Burkholderia...
jgi:Alvin_3294    7 TDEAIIEAGRALVEQGRNV-------------------TGFALRQVIGSGAPNRLKTVWDRHQAQGLPQPEPR----PLP 63 
CCE25734          7 aQEEIIKAGQELQESGRNI-------------------TGFALRTKVGGGNPSRLKQVWDEYVSSQSVVKTEPv--aELP 65 
EEF26803         88 EAIAEQM--------HALWAAAVS-------VQLDDVVRLKTEARDAMDGAETAR----HDA-ALRVELLRVEL 141
jgi:Ppro_3811    64 TDVQGVIl-------RALGQAQVD-------AADK-----LKEEIDQAGAREAEAleglSGA-ERRIEQLTDEL 117
HuoZJU:KKY_3888  66 SSVLDLAkp----viAEIFAQGIK-------AEELRQRESQERFHRVMGDLEAQI----EEI-AEAGEVLETan 123
jgi:Ajs_1887     83 DALKQAAgq----avSVLWAQATE-------LAREELAVLRVEARTEAQSAQTDL----QEV-QQRNTALEAQI 140
CBW77137         85 PALHSTAge----llRGLYDAALA-------TARDELAQERIGMQQTIAAAEQKV----RDA-QLLYEHARAEL 142
jgi:Bphy_4155    86 KALEERAge----llGALFEDALA-------QARASLYEERQEIQALRAAVERNS----QEG-QIRKEISEEAI 143
WP_012732899     87 KALEEKAge----mlGALYEEALK-------EARAALDAERQLADEQVAAAVQQV----RDA-GIRQETLEAAL 144 Burkholderia glumae
Q63PE4           86 KPLEEKAga----llGALYEEALK-------QARESLDGERQQASSEVAAAEQKY----RDA-LIRQEALEAAV 143 Burkholderia pseud...
jgi:Alvin_3294   64 DGIVNVLdrleteysKQLYKLALEiqalahqEAEQTLQAGRDQWQHDRQALEQEV----EDA-SQTVETLEQQM 132
CCE25734         66 IEVADEVaavtksltDRLASLAVE-------LNDKAVKAAERRVAEVIRTAGEQR----EQAeRELADAsqtvd 128
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