Conserved Protein Domain Family
Nucleic_acid_bd

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pfam13820: Nucleic_acid_bd 
Putative nucleic acid-binding region
This is a family of putative nucleic acid-binding proteins. Several members are annotated as being nuclear receptor coactivator 6 proteins but this could not be confirmed.
Statistics
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PSSM-Id: 463988
Aligned: 11 rows
Threshold Bit Score: 132.166
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002603576  130 VMLTVHGHTR--MVEETKNRYRINLA--------RIGRTKK-SSIKYKGYKKHGSILVEFVVPQETLDLLRIMARHSDPR 198 
XP_005986810   49 IFIAFKGNMEdaDLQQKLDKIIENVP--------CLLNMES-RKLKMQKVEPWNSVRVTFNIPREAADRLRLLAQNNNQQ 119 
EFN81453       12 TVVTCEGDLGdpEFPEKLDTIVDSLK--------ALLSKEKgEDLKVDKVEPWNSVRVTFSIPREAALRLRELAAQGSPT 83  
XP_002409522   12 TVLTCEGDLRdpAFPGRLQSLVLRLR--------ELISDEE-KPFWVKKVEPWNSVRVTFTLPREAALRLRQLAERGDRA 82  
XP_001527932  292 VFLAYIAGLQ--EEKYSLDSIREWVKklyapiinELIGTEK----------PLQKVAMA-----ELESLFRLATNLNNLS 354 
XP_002605311    4 TYLVINGQRH--MIQETIDHHRRNIA--------SLCRIKR-SQVKFRGYKKGKSILVHFSIPRENTGVLRLMANHSDPR 72  
EEN43919      130 TYVVVNGQVR--MIQETLDRLRNHIA--------RLSGTRR-SQVKFRGYKKHKSILVHFSIPRENTAVLRHMADHSDPR 198 
EEN61843      235 IYVVVQGQVR--MVQEYLDRLRNSLA--------SLCRTRK-SQLMYRRYRRDRSVLVHFSIPRENTAVLRLMADYSDPR 303 
XP_008108217   48 IFVAFKGNIDddDFKQKLNIILDNVP--------DLLNMES-DKLRLRKVEPWNSVRVTFNIPREAAERLRMLAQNNNQQ 118 
ELW69582      142 IFVAFKGNIDdkDFKWKLDAILKSVP--------SLLHMES-SKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQ 212 
XP_010562871   58 IFVAFKGNIGdrDFEQKLDTILENVP--------GLLHMES-NKLKLQKIEPWNSVRVTFNIPREAAERLRILAQNNNQQ 128  bald eagle
XP_002603576  199 LVFMGVTSLQIGREDPVKVPErtmlydiqndsamsNRLPQDDIQV-GCRVSPPSKATTRHWSSLSALN-----------L 266 
XP_005986810  120 LRDLGILSVQIEGEGAINLAL--------------VQNRGQEVRInGPMGAANQIRMDPGLPMQGGPG-----------L 174 
EFN81453       84 LTQLGILSVQVEGDQVISLRIas-----------rFGGDAQEIVLhSGTAQDGGAKSQGDATNNTATA------------ 140 
XP_002409522   83 LRDLGILSVQLEGDQIISLTLag-----------rYGEPPKEIIL-----QKAAGEAEPGSPSSSPAG------------ 134 
XP_001527932  355 YKELDLRVTQIQSDPFV------------------VQISLDNVIL-GLGTSLNNFDEAQDKAAMGIIGdkakvaqiftmI 415 
XP_002605311   73 LVYMGVKSLQIDTEAPIEVTRetml------ydfkRQVPADDIEV-GCSTQIKQQRTPKNWTRLSALN-----------L 134 
EEN43919      199 LVYMGVKLLQIDAEVPIKVQQgapv------ydvkRQLPVDDIEV-GCSTRTKHQRAPQSWTRLSALN-----------L 260 
EEN61843      304 LVYMGIKSLQIDAEPPITITQeaml------fdvkRQYPADDIDV-GCSTRMTLQRAPRNWTRLSALN-----------L 365 
XP_008108217  119 LRDLGILSVQIEGEGAINLSL--------------AQNRGQDVRInGPVGQGNSVRMETGFSMPGNQG-----------L 173 
ELW69582      213 LRDLGILSVQIEGEGAINLAL--------------AQNRSQDVRMnGPMGAGNSVRMEAGFPMAGGPG-----------L 267 
XP_010562871  129 LRDLGILSVQIEGEGAINLAL--------------AQNRSQDVRInGPLGASNSVRMETGFPMQGGQG-----------L 183  bald eagle
XP_002603576  267 FSDALPLHLKLAESLEY 283 
XP_005986810  175 IRVNNPVAPGMSQAGNV 191 
EFN81453      141 --DTNPSTALPGPSNAT 155 
XP_002409522  135 PSSPVPGTGRPGPSGTA 151 
XP_001527932  416 IRNYVQNSERLVEHGST 432 
XP_002605311  135 FSDALPLHLQVAESLEY 151 
EEN43919      261 FSDALPLHLQAAASLEY 277 
EEN61843      366 FSDALPLHLQVAESLEY 382 
XP_008108217  174 IRINNPAAVMMQQSGNV 190 
ELW69582      268 IRMSTPATVMIPQGGNV 284 
XP_010562871  184 IRMSNAAAVMMSQSGNV 200  bald eagle
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