Conserved Protein Domain Family
IFT43

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pfam15305: IFT43 
Intraflagellar transport protein 43
Intraflagellar transport protein 43 (IFT43) is a subunit of the IFT complex A (IFT-A) machinery of primary cilia.
Statistics
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PSSM-Id: 317678
View PSSM: pfam15305
Aligned: 18 rows
Threshold Bit Score: 79.7559
Threshold Setting Gi: 303285874
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334350951 115 EDSKkFVGVSRRKQEQLARGDDE--V--SRKNLKYET-----------LTAGVd-GIMeIPELEE--E-GREDLSNIVAE 175
gi 126360407  58 DSSG-PSKS---TKRMTEDVEDS--R--LKQQSLDES-----------DEGE---DIPvIPDLED--V-QEEDLALQVAS 112
gi 260836443  80 gpprpsrrqggwaddtgkEKKSA--R--LRSDSPPRR-----------DDSDEd-IPV-IPDLDD--V-QEEDMATQIAA 139
gi 761914034  18 EAPKhKSKKNAPDNDLTFEIEDE--R--LKQ-----------------DNEIEdfIDN-IPDLDE--M-NEGDLVSQVAA 72
gi 299115322  81 EAQKkSGGQKTTTQQKPIEGGSN--R--ANRRNHF-------------DNEETe-ILV-IPDLED--E-GEEDVETKVAA 138
gi 514693236  12 wgdesKGKTTRRNRGESAPEEDE--R--LKMTVPVEE-----------DSDDd--IPE-IPELQDqvE-EEEDITTKVAE 72
gi 575473080 195 asrrdrrgsrsgVPVANNDIDDE--KekVRKTTVAGPmtayaassrkmDDGDQv-MVI-IPDLMD--V-EDEDMSATVAV 267
gi 290999885  72 EDATsTKEQKGGRKLLGIFGKNStaN--VEKQTQQDNsylfqnvprplDVEDEe-GAF-IPSLDQ--V-GGNGMEGSVAE 144
gi 675691723  45 NSAK-SSKF---RRKAAEEIEDI--R--LKQQSLNGS-----------DCEG---DMPiIPDLEE--V-QEEDFVLQVAA 99
gi 301104711  75 TSETkRGGRRRKGSEAPASGGER--R--NQKNRYFEE-----------DDETT--DIMeIPDLEE--EeREQDITTMVAE 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334350951 176 APK-VRTNKVQGMEELEED----MHYK------LPAMDdrDIDLSLLTA-VLCSSEQVAEAEDPWDPDIVltEVASAINA 243
gi 126360407 113 PPS-VQVNRVLTYKDLDND----LMRHa----aFQTLDg-DIDLKLLTK-VLSPEPEVREENVQWDWDLLftEVSSELIT 181
gi 260836443 140 PPS-LQVNKIATYRELDTD----LFKQa----aFLILDd-EIDLKPLAK-CLSAETDVLEEDKPWDWDRLftEVTSELQV 208
gi 761914034  73 PPS-AAVQQITTYKQLDND----LAKHa----sLFTMDg-EIDLKALAQ-VISPESEIQEDDKVWEWDKLfaEVSHEIES 141
gi 299115322 139 APQ-NTTRRVPSLRELDED----LKYa------IPSGAd-GLDMSLLTK-TLVPSEMLEEDDSPWEFDSLlqSVTQEFNA 205
gi 514693236  73 APT-ANI-QMATMADLDKE----LSSTl----sFTQTDs-GVDLKLLIN-NLTPSHLLKEEDKEWDFVHVftEIKSELAA 140
gi 575473080 268 APT-IKTKAMKTISEIESD----ISQSdavvnqLQHLSvpGIDMSILIRaALCPPSQLDELDQPWDWDLLftQVSSEIHA 342
gi 290999885 145 APEeYASQKVQTLQELDQStkatLHHFl----nMKYDDr-GLDLSLLTG-VLSYPLDELEQDDDWGNPQFvrDLLNSIKT 218
gi 675691723 100 PPS-IQVKQVMTYRDLDND----LMKYs----aIQTLDg-EIDLKLLTK-VLAPEHEVREDDVGWDWDHLftEVSSETLT 168
gi 301104711 136 APR-NTTRAVQSLKQLDKE----IKFA------LPSAQthGVDLHLLTS-GLCPERAVSEDDEPWDFDTLlnDIAQEIQK 203

                 ....
gi 334350951 244 EREK 247
gi 126360407 182 EWDv 185
gi 260836443 209 EWEa 212
gi 761914034 142 TWRQ 145
gi 299115322 206 EKRl 209
gi 514693236 141 EEEK 144
gi 575473080 343 EKEK 346
gi 290999885 219 TKKP 222
gi 675691723 169 EWDP 172
gi 301104711 204 DLDD 207
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