Conserved Protein Domain Family
zf-SCNM1

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pfam15803: zf-SCNM1 
Zinc-finger of sodium channel modifier 1
zf-SCNM1 is a C2H2 type zinc-finger conserved in eukaryotes found at the N-terminus of SCNM1, sodium channel modifier protein 1. Phylogenetic analysis of these zinc finger sequences places SCNM1 within the U1C subfamily of RNA binding proteins that is commonly found in RNA-processing proteins, suggesting that SCNM1 is involved in splicing activities.
Statistics
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PSSM-Id: 318097
View PSSM: pfam15803
Aligned: 18 rows
Threshold Bit Score: 51.9943
Threshold Setting Gi: 959089507
Created: 30-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20
                  ....*....|....*....|....*..
gi 195995903   44 CLVCSKHPVFDTIEMLCVHRKGKKHAH 70
gi 72011138    44 CTVCHYRPVFDTVDMLSVHRAGKKHQH 70
gi 1028695730  46 CMICIQRPIFDTINVLSIHRKGKKHLN 72
gi 1039765016  44 CAICPHRPVLDTLAMLTAHRAGKKHLS 70
gi 761904601   44 CTVCSSRPVFDTLMVLSVHRKGKKHIK 70
gi 363742864   44 CTVCPHRPVFDTLEVLAVHRAGRKHVg 70
gi 512865064   44 CTVCHHRPVFSTIDMLSVHRSGKKHLA 70
gi 675852892   44 CTVCHQGPVFDTVPMLSIHRSGKRHKK 70
gi 156399616   44 CLVCNHRPVFDTSAVLSIHRQGKKHLA 70
gi 959089507   44 CSLCPHRPVCDTLQTLVLHRAGRKHLD 70
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