Conserved Protein Domain Family
BAT

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pfam15915: BAT 
GAF and HTH_10 associated domain
GAF-HTH_assoc domain is always found between GAF-2 and HTH_10 domains on bacterio-opsin activator proteins. The exact function is not known.
Statistics
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PSSM-Id: 318187
View PSSM: pfam15915
Aligned: 129 rows
Threshold Bit Score: 84.5068
Threshold Setting Gi: 505221865
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74579440   828 DRAVELQLEATESDDILH-RI--AGVVDA----E----IS--FEGIVPQGDASCIVFFSTDAPS-EDLQACLDtLPRIER 893
gi 495692917  310 DSVVELEFRNTELVDLFV-PN--GDVSNGsddlA----LS--VERTTPVEDGSLLQIITATGGPaARFVEAFSqFPSVEE 380
gi 502710152  623 DRVHEITFRSHRFTETLT-DA--AGDESF----T----VS--IEKSVALPDDQSIAYYSLDGLDpAVFIDVIEqYNPDGE 689
gi 505132319    1 -msivaEFSIKSDDFALChSL--TEAPQM----I----VE--IEQVVATMEDRVMPYFWVSGGDhAEFEDAFQnDDSVTD 67
gi 505136337  435 grgVEARIELREGTHYLS-EIvaGDADDS----T----LEpvVRGTHAGEDNGVVQYVTLQGGSaERFRDAASaHSTVRG 505
gi 505221865  430 DRVFEAKLQIRG-SYYLV-DL--ARSGGF----RdcegIT--VQGTVPLEDDSVVQYLSLQIGEaDVVRDRLEsHAAVED 499
gi 909648128    1 -msvvaeFSVRSDDFALChSL--AEAPHM----V----VE--IEQVVATMEDKVMPYFWVSGGDhAEFEEAFQnDGSVTD 67
gi 505132717  343 DAVIELEFRIEEMAPELI-AL--STEESC----T----IR--FDQMIH-GDETLLVYGSATDLDqETFLETIEeTDGLGD 408
gi 490325586  415 DAVIELEFRLEEMVPELV-GL--SEADSG----R----IS--INQLVR-GDETLLAYGSATDIAqDEFAETVEgIDGVSD 480
gi 909710777  323 DAVIELEFQIDELAAPLV-NL--STAESV----S----TR--FNRLIWEGK-TLLAYGSAEGISqDTFRETVGrTTGFED 388
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74579440   894 IECLTD-----TEDTSLFEATvsG--TQLAL---TVAEQGGAPQLIQSDGKTLKIQIEVPQTVDIRQLIAELRRSCPDIE 963
gi 495692917  381 VTVLSEselgsDGEGALLGLRvsE--PSLST---TLAAYGGRIRDLIITSEDVRLIAEVPPRTDTRRITEALAELYPGTE 455
gi 502710152  690 YHVTDE-----EGSRARVEVQqsN--LTLAA---ELAKYNSWIADGTLQNGEFRLRVQVPQYAQVREVKDIVTEAYPDVE 759
gi 505132319   68 IARIDR-----ADDAILYRAEwtEnvETIVY---AYVELGASILQAVARDRNWEIRMRFDDREGLSQFEDYCEENDISFE 139
gi 505136337  506 VVPIDS-----HGSEA-FRLTvdG--PTPES---TLAPFNALVRSTSIAADRSVMRIELPSRGNLSALVDSLADRYGRVS 574
gi 505221865  500 VVV-VD-----GGSPARLQVTvtE--PVPEA---MLAKRGRVVQSTDVEGTCATITVEVPAREEVRVLVDHLETTFGAVS 568
gi 909648128   68 VARIDR-----VDDAILYRAEw-T--KNVETivyAYVELGATIMEAVGRDRYWELRMRFDDREALSKFEDYCEENGISFE 139
gi 505132717  409 ARVLSA-----RKD--YFEFElvA--PTAVSlfeTIATHGGRVESATIEDGEFRFVVELPRGRDTRQMIELLKEHRSDVT 479
gi 490325586  481 ARFLSA-----RRD--EFEFEvvM--PAAAAlfeAIATHGGRVESATIANGEFRFVVELPRGRDTRQMIELIKEQRPDAT 551
gi 909710777  389 VRFLTN-----GDE--EFEFElaV--PAVDSlfeTIATHGGRITSVTIDDGEFRFAVQLPQGRDTRRIVELVREGHENVS 459
                         170       180
                  ....*....|....*....|.
gi 74579440   964 LVSRHKR--ERSVQTRESFYS 982
gi 495692917  456 LLAQRTR--SREELTRRELVD 474
gi 502710152  760 VLAQIEV--EREstrlsdvfs 778
gi 505132319  140 LNQLQEQ--EQPMASAQydlt 158
gi 505136337  575 VLSCVER--EWTPEeshysfd 593
gi 505221865  569 VSAIRERtdERRVDRRpvvet 589
gi 909648128  140 LNQLQEQ--EQPMASAQydlt 158
gi 505132717  480 YLAQRTT--ERSERSESGSEs 498
gi 490325586  552 YLAQRTT--ERSDRSGsgrgs 570
gi 909710777  460 YLSQRSY--DQRDTgglgaqs 478
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