Conserved Protein Domain Family
Collagen_mid

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pfam15984: Collagen_mid 
Bacterial collagen, middle region
Collagen_mid is the conserved central region of bacterial collagen triple helix repeat proteins.
Statistics
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PSSM-Id: 318244
View PSSM: pfam15984
Aligned: 35 rows
Threshold Bit Score: 116.593
Threshold Setting Gi: 505290752
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123387464  120 VTDGTGGVIVDVGEGVNSLSSGLNDGLGSLSEN-DNALGTTLGGATSAVGEVGEAVSSASTLVTGLN-T--LPvV---G- 191
gi 81379655   100 VTQGVGATVGSTGGIINAAADALSNGLGQTGST-QNPVGTTVAGLGNVVSATSNTVQGLSQTVQALG-T--GP-L---A- 170
gi 590115886   97 VPKGIGSTLSSTGTIVGAAADAVSNGLGQIGST-KDPVGTTVAGLGNVVGATSNTVSGLSSTVKALG-T--GP-L---A- 167
gi 916792217  113 TQSGLSGAVVSTGTAVQTLGTGLTNGIGKLGSV-SDPLNPTLASVGGAVTNLGTAGTQLGSAVAGLGqT--GP-L---Gs 185
gi 504515600  218 VTDGAGNIVTHAGNGVGTLSTGLHDGLGNISEN-DNAIGTTLGGVTGLISDTGRVVSASGQTVAALN-T--MPvL---A- 289
gi 560179043   92 ATQGFGGALTQTGNAVTDLGTGVGSGLGQLGKTgTDPVGTTLASTGSVVTDLGNAGKSLGSGIAGIGkS--GP-L---An 165
gi 1025894968  81 ASQGFGGALKSTGNAVTDLGNGVSAGLGQTGTS-GDSVGTTLASTGNVVTDLGQAGVQLGSGVAGIGkS--GP-L---Ag 153
gi 505290752  177 VTDGTGGVIQQLAAGVDHVGDGITDGLGNLANN-PNAIGTTLAGPTNLVSHTGEAVSSLGDTVAAIG-D--GP-LltnT- 250
gi 198039488  178 MTAGPADTVTGVGTLIRDTTNAVSNGIGQIGFT-PNPVGTTVTGLGTLVGSTSNPVNGLSETVKALG-S--GP-L---S- 248
gi 501404874  101 AQKDLGATVTSAGNTVQTLGAGISNGLGKIGST-PDPVGTTVQSSGDVIRSAGVTVGNAGQTVSDLG-AagSP-L---A- 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123387464  192 -QLderTHLVSGVGDTVNQLGVAVTSTAGSLTASLTaeDGHLSGLTREATSVVRPLVTNLEGTTQTLGDGLGVGQPVDGL 270
gi 81379655   171 -PL---SPVTTPVAGALATAANGVNAAGTMLGNALS--TGPVQQVTQPISSALTPLVITAGQVTQTVGTTTGVGQPVSGL 244
gi 590115886  168 -PL---APVTTPVGTVLDTVANGLTAAGTTIGSTLS--SGAVQQVTQPISSAITPLVITAGQVTQQVGTTTGLGQPVSGL 241
gi 916792217  186 tPI---NGVTTLLGGVVTSVGMAGQSLGTGLTQTVT--SAPVQQLTTSLSSAITPITNVVTNTTQTVGNATGLGTPVAGL 260
gi 504515600  290 -QIdekSGVLTTLGGTVDTLGLAVTGFGDYLTLSVVdeNSKLGQLSTKLTAVVRPVIINVDGTVRTVGQAVVVTPAVLGL 368
gi 560179043  166 tPV---DSLTGVLGNAVATVGQGGVSGGAALTQALG--SAPVVQATTALSSAISPITNTVVSTTQTVGNTTGLGTPVAGL 240
gi 1025894968 154 tPV---DGLTSAVGNVVSTVGQGGIAGGAILKQAFT--GGPVTQVTSTLSKAINPVTNVVSDTTRTVGTTTGLGGPVQNL 228
gi 505290752  251 -PL---NGVTGQLGGVVDGVGGKITMLGDSLTGAVT--TGPLSQLTTQLSGTTTNLLGTVENTTKTIGTTTGLGAPVNNL 324
gi 198039488  249 -PL---APITTPVGGLLDTVAGGLKSGGTMLGSALS--SGPVQQATQALSTAITPLVTTAGQLTQQAGTATGLGQPVAGL 322
gi 501404874  174 -PL---NPVTSPVGSGVSALGQVMQGAGGLVTIGTS--SGPVQQITQQTSNAIVPLSSQVAQGTQAVGSTTMLGGPLAGA 247
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 123387464  271 LTSVGGIVTQIGGRVG---ERSEALGGLGGTLQGVGNAVGDLGGLVTE 315
gi 81379655   245 LQQVGGAISSAGTQIAgtsPSQPLVGDVGQLVSAVGNTVTNAGGLVNP 292
gi 590115886  242 LGQIGGAISSAGKQVGg-tSSQPLVGDVGQLVTAVGNTVTNAGGLVNP 288
gi 916792217  261 LATVGGGLAGVGTKIGg-qLNNPVAADVGGIVAGVGNTVASLGGAVHG 307
gi 504515600  369 VGKVGSAVVVLGEKIGg--IDNIVLADAGGVVEGVGHLLVNLDGNLTT 414
gi 560179043  241 LGTLGGALNLAGTQVKs-aAPNAVVASLGNPLMALGNTATSAGGLLFG 287
gi 1025894968 229 LTTVGNTVGTVGTTMKg-tSSNGVVTALGNTVIATGNTVGGVGSFLNG 275
gi 505290752  325 LTTVGTAVTQTGDQLSa-qS--PALAPVGGIVSNTGQVVTDAGGLVSG 369
gi 198039488  323 LGQVGGAITSAGWKVTs-tSPQPIVGAVGGLVRAVGNTVTNAGGLVNP 369
gi 501404874  248 LNTVGGGLQSAGAQVGa-aGGNPLTRDVGGVVGAAGGTVASAGGLING 294
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