Conserved Protein Domain Family
DUF4843

?
pfam16132: DUF4843 
Domain of unknown function (DUF4843)
This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Bacteroides species. Distant homology analysis suggest distant relation between this family and other families of proteins with immunoglobulin-like folds, which are often involved in substrate binding. However, specific function of this family is unknown. There is distant homology to the Calx-beta family pfam03160.
Statistics
?
PSSM-Id: 318379
View PSSM: pfam16132
Aligned: 10 rows
Threshold Bit Score: 200.277
Threshold Setting Gi: 753801412
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524351784  25 FKGKDAVYFQLQTDdyywtQ----TLDSMVYTFAG-KGVEED-TLWVRVNLQGDAVPYARDILVVTDDEKTTAEEGLHYE 98
gi 256035053  26 FDTTENVYFDFTPN-----Dps-dKTDSLLYSFAYfPDKGED-TVYVPVRISGFRVAHERTFILETVDSSTTAKSGLDFK 98
gi 495784218  26 YNSQDNIAIYYPNY-----P----TTDSLVYSFAYvQGVDRD-TVWLPITISGKRVNHDRKFQLSVVEGSSTAIRNLHYE 95
gi 503986295  26 FHGAPNIYFNVNS------------TDSVLYTFALhPERLKD-TVWVPVRISGDRVDKDRVFSVKVVDSATTAVVKKHYE 92
gi 503377891  25 FDSNGAVYFQTNPS-----Dwn-nLADSVLYSFAG-KDVTEK-TLNLQVNLMGEAVGYDRKFRLVVDQEKTTAKAGVHYR 96
gi 503376728  28 YSGTD--YIRFVSV-----F----EKDSVDYNFGLaGKTTTD-RIGIEVKVTGEVLDYDREYKVKV-NPASTVQEGVHFN 94
gi 753801418  31 YEGPR--YLSFVNE-----K----GADTAFISFANyPGASTH-EVAFVLKLTGNILEEDLTYRLEVVDSLTTAGTTDY-- 96
gi 753801106  28 YTDTPGIYFPDYVV----------GADSLVYSFRM-KDTDRD-TIQIHVKLLGDLLDEAGEYEVIV-SENSSAVAGKHYE 94
gi 753801412  33 FVWGKEDFARIVGP-----EiwtrNTDSMTFTFSVyPEEVKEfAVASCVVIQGKVADYDRTVKLAVDPSKTTAQASDY-- 105
gi 503376781  32 YDAGYASLRFIYAAe---------GNDSIVYSFALhPDKQED-IVEIPFKLVGLAVGQVREIGVEVVKEETTAQENDHF- 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524351784  99 ALKPVYELPADAVYTRIPVIIYNKDEELEKKQVTIALALKSSDELDLGITDR-RTCRLLVSNMLGKPLYWEE--T--IsW 173
gi 256035053  99 ALEKEYIMPADSGLCLVPLILYNKDTVLKSRTLTIGLTLKASKDFGVTFKLQ-NKGIVKFSNRLEKPNWWNT--W--A-G 172
gi 495784218  96 ALKPSYTMPADSGLVHIPVIIKNTDTALTSKSVVLVVRVSGGTDFGSSLPEDlRSKKIYFSNRLEQPAWWKY--W----- 168
gi 503986295  93 PLKDQYTLTANNGYGSVPVILYNNDTMLFKQSFVLKLQIVPTADFNADIAEQ-TSTRVVFSNRLEKPIWWDK--C----- 164
gi 503377891  97 TLEDFYILPKDAYSVQIPVILLRGDALMEKEILQLTLKLEASDDLQPGLTQR-IVTRILVTDMYMKPAYWER--L----W 169
gi 503376728  95 IPAQNCKLRANRVTDTLWVEVMNTE-ELKAEKLYLQLDLVESAHFKLCFPES-NSCKIYLTDRIVRPGWWDE--WheT-E 169
gi 753801418  97 QLPEHLVFRKDRVTDTLVVTVMNSNPLLTEQTLSVGLRIVANEHFRPGLDGQ-QRAKLTFTAVKSKPEWWKGelE--S-L 172
gi 753801106  95 TLQHRFTYEADKSVSSFPVVVMKPGAELDEATVMLELSLKATESLSLGYPDR-VNMRLMITNQLVKPAYWDM--Pl-A-L 169
gi 753801412 106 SLPREVILKAGQDSVGFDILLYRTEA-MQTEEVRLQVKIDGSGDLQPGVDAW-SALTIAWNDKITKPGNWED--L--T-E 178
gi 503376781 101 -IIERSELPADSIKGILKVKVKKTP-ELENHNLVATFRLCGNENFAAAPVNE-NTYKIVLTNHLTEPAGW---------- 167
                        170
                 ....*....|....*....
gi 524351784 174 DFGEYSRKKHELCILELGR 192
gi 256035053 173 ELGDYSRVKHELFIRVSGA 191
gi 495784218 169 -LGQYSRVKHQLFLISSGT 186
gi 503986295 165 PGGSYSIVKYQLFRLSATT 183
gi 503377891 170 MWGDYSVKKHSLLLELFEV 188
gi 503376728 170 GLGSYSETKYRLFIRISGT 188
gi 753801418 173 ILGEYSSKKMEEFILCTGV 191
gi 753801106 170 YFGEYSKVKHQRCILLMGH 188
gi 753801412 179 FFGDYSETKYRFIISTLGV 197
gi 503376781 168 PFGEYSRIKHQFVIQTLGI 186
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap