Conserved Protein Domain Family
NINJA_B

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pfam16136: NINJA_B 
Putative nuclear localization signal
NINJA proteins are Novel INteractor of JAZ proteins found in plants. NINJA proteins act as a transcriptional repressor, the activity of which is mediated by a functional TPL-binding EAR repression motif upstream from this domain.
Statistics
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PSSM-Id: 318383
View PSSM: pfam16136
Aligned: 9 rows
Threshold Bit Score: 66.6386
Threshold Setting Gi: 75131884
Created: 31-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75131884   92 LMRTSSLPTETEEERWRRREMQSLKRLEAKRKRLERR--NSMnsgR---------------------------------- 135
gi 75174856  107 LERTTSLPAEMEEEWRKRKEMQSLRRMEAKRRRCEKQsfRVGnsdDqtvsfe---------------------------- 158
gi 75180099  110 LMRTTSLPAESEEEWRKRKEMQTLRRMAAKRRRSEKL--RTgv-gGgnsnnpeeaatatasr-------------rrgrp 173
gi 685336313  88 LTRATSLPVETEEEWRRRKEMESLRRMEAKRRRSEKL--RARgsgGgniikppeanndsvlgegs------tptrrrgrp 159
gi 685335141 102 LTRTTSLPAESEEEWRKRKEMQTLRRMAAKRRRSEKL--RTg---Ggsstksteannnpgeaatt-------srrrgrps 169
gi 255542012 108 LIRTSSLPTETEEEWRKRKEMQTLRRMEAKRRRSEKQ--KNLnlnRgelslederkgln-------------------an 166
gi 731372117  92 LMRTSSLPTETQEEWRKRKELQTLRRMEAKRRRSEKQ--RNK---Egcvedekrdldspivgfrsniekahhyvaanrsa 166
gi 566183159 111 LMRTSSLPTETEEEWRKRKEMQSLRRMEAKRRRSEKQ--RNL---Rgelsleevkl------------------------ 161
gi 566191167 109 LIRTSSLPTETEEEWRKRKENQSLRRMEAKRRRSEKQ--KNL---Rgelnleevkl------------------------ 159
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 75131884  136 ----------SAGAGGGGRDDGQDAMYptGFQLRRSVVSQGSTSSCMPEQGV 177
gi 75174856  159 ----nerwvtASKSGFLQRHLVSSNRQvcGVDSDGGGATGGGSSSSLSELDN 206
gi 75180099  174 ssglprwsatANKSGLLRQH-----------------------SAGLDSLQV 202
gi 685336313 160 rlvlprwsgtANDGGLLRQH-----------------------SAAHDSLQV 188
gi 685335141 170 sglprwsataANSGGLLRQH-----------------------SAGHESLHg 198
gi 255542012 167 rgnwvaptwsRN----VNRGNTLQGLIgqQQGSQGSVESQGGSSSGISEMES 214
gi 731372117 167 aafgfptwaaAAAAAKGKGSGSLQNFV--QQTSQGSGESQGGSSSSMSELES 216
gi 566183159 162 nkgnwvptwaSKQSGVVNRGNNLAGQQqqQQASQGSVESQGGSSSGLSEMvs 213
gi 566191167 160 nkgnwvptwaNKQSGVVNRSSNLEGQQq-QQGSRGSVESLGGSSSGLSEMES 210
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