2KSN


Conserved Protein Domain Family
UBD

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pfam16455: UBD 
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Ubiquitin-binding domain
This ubiquitin-binding domain is found in ubiquitin domain-containing proteins.
Statistics
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PSSM-Id: 318622
View PSSM: pfam16455
Aligned: 57 rows
Threshold Bit Score: 136.551
Threshold Setting Gi: 398410937
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2KSN_A         16 RNQPLKkEKPkW----KS-D-YPMTDGQLRSKRDEFWDTApaFEGRKEIWDALKAAAHAF-----------ESND----- 73
gi 589113325   64 INRPLRr-HQ-W----TS-A-QTWTRRDIDKERAEFFDTR--VVCRPEIWQTLHAALQVLwesgp-gaedgAHDDa---- 128
gi 640926181  385 INKPLRr-HE-W----SS-KgRAWTRTALDRERGDFFDTR--VTGRPEVWQSLRAALEVLwdpvgqgaaadGTGG----- 450
gi 927394465   73 INRPLRk-HE-W----TSgQ-RRWTRRELAKEREEFFETR--VVCRPEIWQTLHAALQVLweasp-edsqdEDSA----- 137
gi 530477704   64 INKPLRr-HV-W----AS-KsRVWTRSAINRERKDFFETR--VTGRPEIWQSLHYALQVLwdpashgaaddGTNG----- 129
gi 573976048   65 INKPLRr-HV-W----ASvD-RQWTRKELDAERAEYFDTR--VTARPEIWQTLHNALQVLwep-----ptqETNDngq-- 128
gi 913771411  973 INKPLRr-HA-W----TS-TsRTWTRAALARERTDFFDTR--VTGRAEVWETLHAALRVLwdpa----aqgAADDgt--- 1036
gi 156053119   62 INKPLR-SHV-W----MSgS-KLWTRREIDRARAEFFDTR--VSGRPEIWQAIKAALEVMwkgg---etgeEDGG----- 124
gi 521772441   37 lNKPLRrQ-I-W----SStE-RTWTNVELERERAEFFDTR--TSGRPEVWQTMKAVLEIL-----------WASEnskdv 96
gi 748501961   21 lDRPLKrPKD-WlyntAH-G-PAPTASALQRLRDDFWFTQ--VSGRPEIWSTIKAVCEML-----------MADKsd--- 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
2KSN_A         74 ----HELAQAIIDGANITLPHGALTE--CYDELGNRYQLPVYCLAPPINMI 118
gi 589113325  129 ----LATAQSILTAAEISLPTGDLAQg-AYDALGNLYALPEWVVSDPENLV 174
gi 640926181  451 ----LATAQGILDAAEITLPTGDLAQg-AYDQLGNYYPLPEWLVADPANLV 496
gi 927394465  138 ----LATAQTILNAAEISLPTGDLVNg-AYDSLGNLYALPEYIVSDPDNMA 183
gi 530477704  130 ----LATAQSILDAADITLPTGDLAQg-AYDQLGNYYQLNEWAVANPTNLV 175
gi 573976048  129 --taLQTAQSMLTAAEISLPTGNLVNg-AYDALGNYYALSEWIVSDPQNIV 176
gi 913771411 1037 --ngLATAQGFLTAAEVTLPTGNLTNg-VYDALGNYYPLPEWVVADPDNVA 1084
gi 156053119  125 ----LGTAQMILNAAEITLPDGDMAVrgCYDSSGALYRVPEHVVSDPANLL 171
gi 521772441   97 tdvgLETAQQILDAAEIILPHSNISPg-IYDSFGAYYPIPKHITSSPKNVm 146
gi 748501961   82 --aqLKTAREMLAAAEITLPDGTFIGg-AWDKAGNNYIVPRHIISNPMNVr 129
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