1XEZ


Conserved Protein Domain Family
Beta-prism_lec

?
pfam16458: Beta-prism_lec 
Click on image for an interactive view with Cn3D
Beta-prism lectin
This beta-prism fold lectin is the C-terminal domain of the Vibrio cholerae cytolytic pore-forming toxin hemolysin. It binds to N-glycans with a heptasaccharide GlcNAc4Man3 core (NGA2).
Statistics
?
PSSM-Id: 318624
View PSSM: pfam16458
Aligned: 7 rows
Threshold Bit Score: 181.116
Threshold Setting Gi: 515609707
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1XEZ_A        592 SPILGY-TQ-GKMNQQRVGQDNRLYVRAGAAIDALGSASDLLVGG-----NGGSLSS-VDLSGVKSITATSGDFQ-YGGQ 662
gi 81545236   508 SKVYGYqPN-NNPASIALAVDGKISVRSGFAIDAIGASASTLVGG-----TGGNLNAaVNVKDIKAIDLTWGKYY-WGGY 580
gi 504023961  588 SPVLGL-AV-GQLNSQPLSAEGTLFVRSGAAIDALGTAEGLMVGG-----SGGSLSQ-VDLRQVQSVVATSGDFN-YGGQ 658
gi 503634366  611 SVVFGF-TS-GSLALQDVGQAGILYIRHGAAIDAIGTQANATQGG-----GSGSLTE-IDLKRVTQITVTSGEFK-YGGN 681
gi 335342454  571 SKVYGYrSH-TNPSTITITSDAKLSVRSGLAIDAVGSSAQSLIGG-----RGGNLSQpVNIKDVKSVDVTWGKYY-WGGY 643
gi 335342454  886 SPIFGY-SN-TQQSQRVVTADNQMYLRSGFAIDAIGTTANNLVGGpvqgtNGGVLRApIALDQLQSVEVTSGLYN-WGGY 962
gi 515609707  318 SPVYGY-THlHHSHPIKIADDNQLKIRSGDLIDAIGSTASNMVGG-----QGGSLHT-IDASKVRSVDVTYGKYKtWWTY 390
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1XEZ_A        663 QLVALTFTYQDGRQQTVGSKAYVTNAHEDRFDLPDAA-------------KITQLKIWADDWLVKGVQFD 719
gi 81545236   581 HLLALDFRMSNGSVISMGSKNYAYSKQTERFTVPAGS-------------RIKGIKAWTAGWLLDGVQFE 637
gi 504023961  659 QLLALTLTYLDGSVQTLGSKQYGTHLHEDRFDVPAGQ-------------SITAVKIWADNWLVKGLQLE 715
gi 503634366  682 HLLRMAFKLDDGSTKVVGSKGSAISTHDEVFELPAGS-------------AIRQVKVWSEGWLADGIQFI 738
gi 335342454  644 HVVALDFRMSNSSIIRMGSKKYAYSKQTESFNVPADS-------------QIKSIKVWTEGWLVDGLQFE 700
gi 335342454  963 HIVAIKFTMKDGSSVLLGSTHYASNKKVETYTVPQGK-------------RIKQINVWTGGWLVEGLQFV 1019
gi 515609707  391 GVLEMEFTLNDGSKITLGSKDSA-------FKYPALEwrtkevpylglewRTKQVSYWFFGWHTKTVSYl 453
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap