Conserved Protein Domain Family
zf-C2H2_assoc

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pfam16606: zf-C2H2_assoc 
Unstructured conserved, between two C2H2-type zinc-fingers
This domain is found on a set of eukaryotic Zinc finger protein 536 transcriptional regulator proteins sandwiched between zf-C2H2, pfam00096 and zf-H2C2_2 pfam13465. It is not conserved between other pairs of the zinc-fingers on these sequences. It is natively unstructured, and its function is not known. The proteins recognize and bind 2 copies of the core DNA sequence 5'-CCCCCA-3'.
Statistics
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PSSM-Id: 318747
View PSSM: pfam16606
Aligned: 6 rows
Threshold Bit Score: 110.566
Threshold Setting Gi: 410911952
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410911952   695 RRNLEEAFqQQGLDERRGSASDPESQSISRSTTPGSSNVTEESGAGGGHSQTGSVQDDSPHpSSPSS-DLGDDVAKVSGA 773
gi 973209387   665 RKQGEEGI-HGCLDERRGSASDPESQSISRSTTPGSSNITEESGAGGGLSQTGSAQEDSPH-PSSPSsDAGEEVAKPMGV 742
gi 765116427   696 R-GIDEAL-HQGAEERRGSASDPESQSISRSTTPGSSNVTEESGAGGGQSQTGSVQDDSPHpSSPSSgrtpdaktnsnil 773
gi 961942862   695 RRGLDEAL-HQGVDERRGSASDPESQSISRSTTPGSSNVTEESGAGGGQSQTGSIQDDSPHpSSPSS-DAGEDLAKAAVS 772
gi 637338374   657 RKAEDEII-QASIEERRGSGSDQESQSVSRSTTPGSSNITEESGMGGGLSQTGSAQEDSPHpSSPSSsDVGDEVGRSAGI 735
gi 1040115701  664 RKSDEDGL-HAGLEERRGSGSDQESQSVSRSTTPGSSNITEESGVGGGLSQTGSAQEDSPHpSSPSSsDMGEEAGRPTGV 742
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