4A0E


Conserved Protein Domain Family
Yop-YscD_cpl

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pfam16697: Yop-YscD_cpl 
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Inner membrane component of T3SS, cytoplasmic domain
Yop-YscD-cpl is the cytoplasmic domain of Yop proteins like YscD from Proteobacteria. YscD forms part of the inner membrane component of the bacterial type III secretion injectosome apparatus.
Statistics
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PSSM-Id: 318828
View PSSM: pfam16697
Aligned: 23 rows
Threshold Bit Score: 81.0986
Threshold Setting Gi: 81727585
Created: 31-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4A0E_A         8 RFYQGKHRGVEVEL-PHGRCVFGSDPLqSDIVLSD-SEIAPVHLVLMVDEEGIRLT--DSAEPLLQEGLPV---PLGtlL 80
gi 81418527    6 RFYRGLNKSIEVNL-AEGRLAIGSDPLqADIVLVD-EDVAPVHLILEVEPDSIRLLewAGEAAPSQNGEPL---SPGatL 80
gi 81541259    6 RFYSGLNQGAEVSL-GEGRVALGSDPLqADLVLLD-EGIAAVHLVLEVDAQGVRLLewAEGCEPRQDGQAQ---VAGaiL 80
gi 81727585    7 RILSGVHSGVEVTL-PEGALVLGSDDFiADLVLSD-AGVEANHFTLVCDSESVMLR---GCQDVTINGENRavgESGieL 81
gi 123532916   9 KLLSGPHAGAEMRL-ENRAYRVGAADD-CDIVLHD-KLLPDLAFSLIVEFGVVRLQ--RDVESIALTHVGReieDLEiaI 83
gi 123374644 140 RFMNGPREGERIELgDAKEVILGRDEKdADIILKD-DLVSRKHAKVRRDWSGTHVEdlGSRNGIKVNKKRVn--RRQ--L 214
gi 502677609  34 EILRGKARSLVREV-HSPVFLIGSASD-CDLVLGD-KSFPDAYAYLYLNASGISIRylGEGPQLLVNDQPVe--gSP--L 106
gi 499406179   5 RVLTGLHRGAALPL-CGNAWRIGAADD-ADLVLYD-PGIAPYHGQLEKAADGWALS---AQDGTLSNAEGHsv-eYInaL 77
gi 504269751 205 RILNGPHKGKEFIL-NQNRILIGSGKR-CEVLLSDyDKVEPVHAVLRAKNRELTLSsdLAGEQLIVNDTQVe--eRL--L 278
gi 504857122 170 EVIKGTNEGEIYDL-NKDEYIVGRQED-CDIEVRD-LEISRHHLKLYTENRRWFVQdlGSTNGTYLNKLRVd--RYM--V 242
                         90
                 ....*....|....*....
4A0E_A        81 RAGSCLEVGFLLWTFVAVG 99
gi 81418527   81 QALARQEVGPLLWAFCDQQ 99
gi 81541259   81 QALAGQTCGPLRWAFCDPQ 99
gi 81727585   82 ERHAVISVGVVKFALGYVE 100
gi 123532916  84 EPYGVYSLGLLHFCFGPAD 102
gi 123374644 215 KDGDELEVGATRFLYVDPT 233
gi 502677609 107 AVGDRLEMGIFEFRLAEIH 125
gi 499406179  78 PPGTPFALGQIWLCIVAAD 96
gi 504269751 279 KYEDVLKIGTAKLLYkqe- 296
gi 504857122 243 NPGDRIKAGQTHFQFQVDK 261
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