4DKS


Conserved Protein Domain Family
Phage_integr_3

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pfam16795: Phage_integr_3 
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Archaeal phage integrase
catalyzes cleavage and ligation of DNA.
Statistics
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PSSM-Id: 318904
View PSSM: pfam16795
Aligned: 10 rows
Threshold Bit Score: 204.538
Threshold Setting Gi: 332695541
Created: 31-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4DKS_A         3 IYIPTLEEIKRTLQLAKDY-SENVYFIYRIALESGVRLSEILKVLKE---PERD---ICGNDVCYYPL-S-WTRGYKGVF 73
gi 74502030  117 EVFITNEDVRTAYNEVQKR-GKPAETLFLLLVFSGIRLKQAVELLRTy-dPTKLy--LIDDKAARYPI-FsTSKGKKKAF 191
gi 74503152  124 QVFISNEELREAYIELTKHyGKEAEVLFKLLAFTGLRLKHIVKMLNTy-dPQKLv--IVNEKVARYPM-AeHGKGTKRAF 199
gi 121732277 137 TYVPPDSSILEAARRLEGT---RVYHVFLLLVGSGARLSTVHWLLRQgldSSRLv-cLEDRGFCRYHV-D-YVKGEKLQW 210
gi 74502510  118 KVNVPDAQIREALKYYEQK-DPILATIYKTLVFSGLRLKAVIELFNEf-dPEKLilpREYPNIAKYPI-H-KQKGQKKAF 193
gi 502704613 162 EYVPEDSKVIEVFRKFKD---ERYKILFKLLAFSGIRLREALHLLRTf-dSNKL---ITNDKIAKYPL-G-LDRGSKKSY 232
gi 332695541 114 YRIPSIEEIKKVLNH---E-DERIRILYRLLLESGIRLKEALFILNNy-dPALD---QMEDGFYVYTV-N-LIRKSKKSF 183
gi 284011973 132 KIIPTDEDVREGFEYYKRNlAEEYYLVALIIAFSGARLRHVLRMLEEw-dPTYL---VYTDDFARYEIgH-LTMGHKEGF 206
gi 850987433  89 LNIPTVDEVKRTLDLAKEY-SENVYFVYKIALESGARLSEILKALKD---PSRD---ICESDICYYSM-A-WQRGYKGVF 159
gi 6015694    67 LYIPSIDEVRQTLEIAREY-SENIYFIYRLALESGARLSEILTVLRN---PDRD---VC-EDICYYPL-S-WERGFKRSF 136
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4DKS_A        74 YVFHITPLK-------RvevtkWAIA----DFERRhk---------daIAIKYFRKFVASKMAELSVPLDIIDFIQGRK- 132
gi 74502030  192 WAYGPRDFFer---leP-----LEVK----YNTAKdlva------fgkVSANSIRKWHYTFLIQKGMPSEIADFIQGRV- 252
gi 74503152  200 WAYMPADFArs---leR-----MSIT----YFQAQprtt------ykrVSASTVRKWFSTFLAQRKVSMEVIDFIQGRA- 260
gi 121732277 211 ALYSPREFWervleepRltlsyNRVQ----EQIAGa-----------gVKAKHIRNWVYNKMLSLGMPEGVVEFIVGHK- 274
gi 74502510  194 YAYLPRDFAlte--leQlpldyEHVK----NRLRVklrsvrnteksvqFSAAAVREWFATFLARKGCPFEVINFIQGRA- 266
gi 502704613 233 YAYLPLEFSne---lrRmeldeDAVS----QYFAKk-----------gLPAKYLRKWNYNFLILNGVPESVADFIQGRA- 293
gi 332695541 184 YAFHITPLQ-------KtyiteSIID----HTDLP-------------VKPKFIRKFVATKMLELGIPSEVVDFFQGRT- 238
gi 284011973 207 WIYMPTWLAkk---irRmklseETVKtkkiTYKAKsg---------rlVTSKYIRKWFNNVLADFEKDKDVRSFIMGRPg 274
gi 850987433 160 YIFHITPLR-------QisiteSAIQ----DFERRrk---------naIRIKYFRKFVASKMAELGIPLDVIDFIQGRK- 218
gi 6015694   137 YIFHITQLK-------KiditqWAVS----DFEKRyd----------vVKIKYIRKFVATKMAELGIQLDIIDFIQGRK- 194
                        170       180
                 ....*....|....*....|....*...
4DKS_A       133 --PTRVLTQHYVSLFGIAKEQYKKYAEW 158
gi 74502030  253 --SGSVGATHYLNKAVLADEWYSAVVDD 278
gi 74503152  261 --PRSVLERHYLNLTVLADEAYAKVVDD 286
gi 121732277 275 --ASSIGRRHYMNMIVQADMWYTTYLPV 300
gi 74502510  267 --ERGVLEKHYLNLEILADEWYSSVVDD 292
gi 502704613 294 --SITVGSMHYLAKVKQADEWYSRIISK 319
gi 332695541 239 --PSSILSKHYLDLLTLAKKEYKKYAEW 264
gi 284011973 275 diGKSVEGEYYLELLRRADKVYPLVMKR 302
gi 850987433 219 --PTRILTQHYVSLFGIAKENYKKYAEY 244
gi 6015694   195 --PSRVLTQHYVSLLGIAKENYKKYAEW 220
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