3TBI


Conserved Protein Domain Family
Trans_coact

?
pfam16805: Trans_coact 
Click on image for an interactive view with Cn3D
Phage late-transcription coactivator
This family of proteins is found in Caudovirales. It is a late-transcription coactivator which interacts with the host RNA polymerase forming a part of the initiation complex.
Statistics
?
PSSM-Id: 318913
View PSSM: pfam16805
Aligned: 34 rows
Threshold Bit Score: 75.3287
Threshold Setting Gi: 448259998
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
3TBI_A        40 RQENGFIIEKXVE-E-FG--XSYLEATTAFLEENSIPETQFAKFIPSGIIEKIQSEAIDENLLRPSvvrceKTNTL 111
gi 75096310   18 PVKFSMEIEKIVL-E-EG--VNYIDAIVQYCDTNNIEVESVTKLISKPLKEKLKWDATQLNFMKAT-----SKAKL 84
gi 61805873   18 PVKFSMEIEKIVL-E-EG--VNYIDAIVQYCDTNNIEVESVTKLISKPLKEKLKWDATQLNFMKAT-----SKAKL 84
gi 472340333  17 aAKFSVEIESIVK-E-GD--LNYIEAIVQFCEDKNIEMDGISKLISKPLKEKLKYDAQRLNYMKRT-----SKAFL 83
gi 326783978  43 QNKFTTDVEQLVL-N-TE--LNYIEAIISYCEENNIEFESVGKLISKPLKDKLKAEATELNYLKRTs---rSKlpl 111
gi 255928924   3 aARFSQEVEKIALhN-PD--MNYIDSVIHYCELNEIEIDSVSKLISKPLKEKLRYEAQQLNFMKKT-----SRAKL 70
gi 326782496  31 sAKFSEEIENIVK-N-GNglVNYIEAIICFCQDQEIEMETVPKLISKSLKQKLQYDAQKLNYIKKTsrgvlpl--- 101
gi 469519355  14 PSKFSLEIEKLVK-T-SGglISYIEAVVTYCQENEIEIETVPKLLSKPLKERLRHEAQRLNYIKQT-----SKGVL 82
gi 326782023  16 PSRFAQEIESLVH-EnEG--MSYIDAIIHFCELQSIDVESVPKLISKPLKEKLKYEAMELNFLKKS-----SRAKL 83
gi 827047565  14 AARFSQEVEKIAL-HnPD--MNYIDSVIHYCEVNEIEVDTINKLISKPLKEKLRHDAQQLNFMKKT-----SRAKL 81
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap