3NS4


Conserved Protein Domain Family
VPS53_C

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pfam16854: VPS53_C 
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Vacuolar protein sorting-associated protein 53 C-terminus
This is the C-terminal domain of fungal vacuolar protein sorting-associated protein 53.
Statistics
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PSSM-Id: 318949
View PSSM: pfam16854
Aligned: 17 rows
Threshold Bit Score: 265.36
Threshold Setting Gi: 444319414
Created: 31-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3NS4_A        25 WNFLDKVIDIXTTNFVSNTIRLLQPVPPFSL-----------AGS----KRKFETRTVVNIGEQLLLDLELLKEIFHTLP 89
gi 74694958  561 WNMLDRITELVTTEFLRCITKLLVPKEPFGN-----------MKS----RRQFTVAQVIGIGKQLLLDCQSLERILKKLP 625
gi 74609414  574 WNFLDKVINLVFSEFLGCILKLLQPTPPYAS-----------ATT----KPRLNPRAVVNIGEQLMLDLDLLSNILNSIP 638
gi 403216427 574 WNFFDSFIDLITTTYVDCIIRLLQPLPPFAS-----------SNS----QRRLSTKQVINIGEQLLLDMQLLKQLLSSMC 638
gi 156844883 577 WNFLDKIIDLVSYDFVGCIIKLLQPVPPFAS-----------TTS----TRKLSAEKIVVIGDQLLLDVSKMKDTMNLML 641
gi 410079743 571 WNFFDKVVDLIISNYVDSIVKLLQPLPPFAT-----------LNS----KRQLTVKKVISVGEQLLLDIELLKEVFHNLL 635
gi 367007166 599 WNFLDRLIDSITNSFIGCIIKLLQPQPPFIQ-----------GNTi--iKRKLDSRKVVLIGEQLLLDSQLLKDIFNNLV 665
gi 363756280 562 WNLSDKIVDQVTVEYLRCIVDLLKSQEPFGD-----------INT----KRHLSAKQVVHIAEQLLLDVQLLKEALKKLP 626
gi 365984885 606 WNFLDKIIELIANDFITRIIKLLEPQTPFLI-----------TNTnvikKRKYDVQHTITIGEQLLLDIELLKFTLHSLS 674
gi 444319414 599 WNFLDKLIEMISQEFTYHIIKLLLPKPPYGNrpisttatstaTLK----NISMNSIEVNNIGEQLLLDCELLKQTMHSYL 674
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3NS4_A        90 ESVsnds-------dlrENTSYKRVKRHADNNIDQLLKFIKLLXAPLDSADDYYETYSKLTnNNPDSAVWSFVLALKGIP 162
gi 74694958  626 EGLpd-----------gKATQNNRINGHIDTNIAQLSALCKVLAVPLDSPASYHDEYFGII-NNKNHAVWALVFALKGMQ 693
gi 74609414  639 ENMsgdg-------estNNSSMKRTKKRIESDMDKLMKLVKLLIAPVDSPETYAETYNEITgGNDNSVVWAFILSLKAVP 711
gi 403216427 639 ESVvgp--------tssESPFFKRAKNHLDTNLNQLLSFIKLLVVPLDSPEDYYETYGRLTlDNSDPIVWAFTISLKGAP 710
gi 156844883 642 DMMsks---------siQSTSLNRVKKHSDNNINLLTRFIKLLMAPINSPDDYHENYKTLTgNNINTAVWSFLFALKGAS 712
gi 410079743 636 NHMaelt-------ssiHDMSAKRIKRRMDSSLELLLHFAKILVLPLDSPENYYNAYSRLTdNNSYSLIWAFIFSLKGTE 708
gi 367007166 666 LNMetd---------slQNTSSKRVKKHINNNIDQILSFVKLIMVPMNSPEDYCDNYNRLTnKNTNPIVWAFLFCIKGIE 736
gi 363756280 627 DSLpnv--------ssgQN---NRVFRHVDANIQQLTDFINVLAIQADSPAVYQECYDSII-KTRNHVVWALILMLKGTP 694
gi 365984885 675 NCIvndrsdvktsssmtISTSRKRFENHVDVNVEQLLSFVKLLVAPLNSPDDYFETYRRLCpNNNRNIIWAYCFVLKGVE 754
gi 444319414 675 k----------------YSNNKKTIDRHITNNIEKIINFIKLLITPVDSSEDYNEAYKRLTkNNHNILIWTMTLALKGVS 738
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3NS4_A       163 WDLALWKKXWSAYnle-------------tdDTDEGSRPd--sNRDLFIFkwDKVLLGQFENNLARXQDPNWSKFVRQDL 227
gi 74694958  694 WEISEWKTYWEEFk----------------tRETSATES----SIDLFIFyrDESTVRHFVAAMLKVVDPGWKAFASEEL 753
gi 74609414  712 WDLEQWRALRAAYkt--------------klDERKEEGKp--iDHSMLIMewDSRPMMHFQANICRIQDPEWSKLVRNEL 775
gi 403216427 711 WDLGLWKKHWEVFhr--------------kiEGKND--Nd--tARDFFIYrwDPKHLSRFEANIRRIQDSTWSAFFSGQL 772
gi 156844883 713 WDLNFWQQHWTVFnl--------------dlEKDDSSEPv--qTNDNFIFiwQPELFAQFQVNLLRIQNLSWTDFIRNEL 776
gi 410079743 709 WDLASWKEYWFAFke--------------kmAETSSTENe--nEADLFIFkgNSKHLTRFEANLGRIQETAWSDFVKTEL 772
gi 367007166 737 WDLNVWKSYWKVFtldvnerdsqeiieergdKSKTATKTp--aNNSEFIFtwQPALLSNFQNNLYRIEDEKWLVFIKQQM 814
gi 363756280 695 WDLAMWKSYWIEFk----------------kEEPQATEKd--rDTGFFIFgrDEGIIRSFVLGLLRIPDPTWKTFISDQL 756
gi 365984885 755 WDLPLWKNYFSSFhlglveevapeegnrgdqEKKQEKTNh--aTNKYFIFqwNKKLLFDFERNLLQINEPNWVNFIRNDL 832
gi 444319414 739 WDVSIWKQHWSVFylelseskntegitgttmKEKDQTKQkiegTTDLFVYawNRKQVIEHERNMRALVGSSWRELLSEMg 818

                 .
3NS4_A       228 K 228
gi 74694958  754 R 754
gi 74609414  776 R 776
gi 403216427 773 K 773
gi 156844883 777 K 777
gi 410079743 773 H 773
gi 367007166 815 K 815
gi 363756280 757 R 757
gi 365984885 833 N 833
gi 444319414 819 i 819
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