Conserved Protein Domain Family
T3SS_basalb_I

?
pfam17001: T3SS_basalb_I 
Type III secretion basal body protein I, YscI, HrpB, PscI
T3SS_basalb_I represents a family of Gram-negative type III secretion basal body proteins I. It is the inner rod protein of the secreted needle. YscI is suggested to form a rod that allows substrate passage across the inner membrane of the needle protein YscF through it.
Statistics
?
PSSM-Id: 319064
View PSSM: pfam17001
Aligned: 13 rows
Threshold Bit Score: 76.2366
Threshold Setting Gi: 123532912
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81655379   25 ADVDAFTRAMFG----------H-------------------------A--------------AQSPEEVAAGGLQTKSQ 55
gi 81645164   53 QDVSWFSAALSSa--------pM-------------------------T--------------AGSGNSQWLGALAEKSQ 85
gi 81727589   25 GLSERFEQAMSIp---------E-------------------------G--------------NNGLEGGLLENISELKN 56
gi 81541256   26 AHVAEFERAMGG---------------------------------------------------AGSLGGDLLSELGQIRE 54
gi 81418523   25 ENIASFEHAMSN------------------------------------Q--------------DQGIENNLINELGQLRQ 54
gi 123532912  28 AALERFQQSLQPqpda-----------------------------sahStsdgspvilgveasENTLGDKVLQGMQSVKS 78
gi 503425605  36 ADSNWFSSSIQP----------Sen----------------------kQ--------------PENVADKIVSQLSGSSE 69
gi 489334751  27 ADVDLFSSLMRD----------Ngnt--------------------adQ--------------PSHLAAVIAETVNARMT 62
gi 503715032  33 DAVARFHEAMSG----------SsgaqpeaqaaqpasetggvervqpeG--------------PSTPGDAILRGLGHMNE 88
gi 502816542  12 SLVEKFSKLMEL----------Gtpaiklat----------dmvtlpgM--------------DNPLMKATKAFSSKSAS 57
gi 502997859  34 AEAEHFKSMFEQylnkdalrlkP-------------------------N--------------THSLGSALAQRTSSLAA 74
gi 754962880  22 ADVTWFSAAMEPaa-------pA-------------------------T--------------PTADNKAWLGALAEKSD 55
gi 560180870  32 ADAVGFAQAMAN------------------------------------A--------------PGLPEHHLLNAAGRLAG 61
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81655379   56 AIGEAIDNARATTGVL---N--NPAEMLAAQSKLLHSIVEVDLVAKTAGALSQGVNKLVSMQ 112
gi 81645164   86 GLNGVFKSAERDVSQAmrsN--NPKDVLDATRTLSSFYLESLLSAKLVAKSVQSLEKLTNLQ 145
gi 81727589   57 TIDNAKSSLQDSMKMVg--D--DPAQLLQMQWALTRITFQEELIAKTVGKTTQNVETLLKAQ 114
gi 81541256   55 RFSQAKQELQMEL--StpgD--DPNSLMQMQWSLMRITMQEELIAKTVGRMSQNVETLMKTQ 112
gi 81418523   55 QLTQAKQDLETQL--AvsgS--DPNSLMQMQWSLMRITLQEELIAKTVGRLNQNIETLMKAQ 112
gi 123532912  79 GYDQQMEAMQLTLNSAd-pL--NMSDMLKLQMDLAQLTLQGELISKTVSKSTQNLDTLLKSQ 137
gi 503425605  70 HLQKLEDKANRAIKKAgvtG--DPMDVTDANRSLSSFYLESLLTTKLVSKGAQTIEKLTSLQ 129
gi 489334751  63 SVDDLSRQAMRHMKEAvtgN--DVSAITDMSRALSQYSLQMAVTTKVVSKTGQALEKLTNMQ 122
gi 503715032  89 GFDHAMQQVNDVLSKTkpgEmmNTADLMKVQMSFTQASVQQDVIGKVVGKATQNLDTFLKNQ 150
gi 502816542  58 DTVTVSPVDMTNVEGVsysP--SPEAMLGGQMLMGKAVIEVDLVAKTAGSLSQSINKLVNMQ 117
gi 502997859  75 EVKQDQLYVSRLLEQAtrtG--DSMQLMKAMMALSDYQIRVQTISKCVSKASTSVDSLTKLQ 134
gi 754962880  56 NLENLLQKAERQVGKSinsN--NPKDVMDATRTLSSFYLESLLNAKVVAKSVQSLEKLTNLQ 115
gi 560180870  62 DTERLAERITAQ---AgtrN--DPVRLLAAQRDLTERVLSLEFVAKVAGAATQGVNKLVHMQ 118
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap