Conserved Protein Domain Family
SRP_TPR_like

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pfam17004: SRP_TPR_like 
Putative TPR-like repeat
This is a family of microsporidial sequences that are likely to fold into a TPR-like structure. Many sequences are annotated as being signal recognition proteins.
Statistics
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PSSM-Id: 319067
View PSSM: pfam17004
Aligned: 9 rows
Threshold Bit Score: 116.309
Threshold Setting Gi: 380040564
Created: 31-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74621493   19 KNGRHEEISRLEHPELGQF---------RAVAYINMGRFSEALKYAAKNS----------------------------FE 61
gi 19074868   19 KNGRHEEISRLEHPELGQF---------RAVAYINMGRFSEALKYAAKNS----------------------------FE 61
gi 300708182   9 STEVHEKITKLELPEIGPY---------KAVALIHLDKYQEALKYCIKGS----------------------------YE 51
gi 484853293   9 TMESYEKIAKLEGDEYNQY---------KVIALIYLDKFKEALKFVQPGS----------------------------FE 51
gi 667638801   9 QNEEHEKILQLASPEYNRY---------KVIAAIQLEKYEEALLYASKAS----------------------------FE 51
gi 667632391   9 ENKEYQKILELEGDQYDRF---------KVTCLIHLEKYREALILIKKMEkrqatpqdemgdrmskmqigmgtnedtrYE 79
gi 380040564  36 TMEDHEEILRAANAVLKKSktnqdalrtRVIALLKLDRYADALRALDDGGeals--------------------eschVE 95
gi 353230027  21 SAQAYDKIINISGKILTKFpgetkafqcKVVALIRAEKYEDCLSFLKKNPtlss---------------------hviFE 79
gi 685882205   8 KNDCHEEISRLEHPEFSRF---------RAVAFISMGKFKEALKYTEEGS----------------------------FE 50
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 74621493   62 RAYALYKLRKYKKALRVLRRMDT-E--GSRVLASQCLYYLGYYNTA---YKML------AEVKRDDDVVVNLQAMKSL 127
gi 19074868   62 RAYALYKLRKYKKALRVLRRMDT-E--GSRVLASQCLYYLGYYNTA---YKML------AEVKRDDDVVVNLQAMKSL 127
gi 300708182  52 SAYIYYKLKKFCKALKIVNKNSG-E--KWDVLKSQILYRMGFFNSA---FNCL------SKLPRDDDIVVNLQAIKSM 117
gi 484853293  52 AAYIYYKLKNYKKALKIISKFKD-E--KSFILKSQILYSLGFYNKA---YEIL------RNMPKDDEIVINMQAMKSM 117
gi 667638801  52 LAYIHYKLKNFKKALKVLRKLSG-K--QADILKSQCLYFLGYYSDA---YGLL------SRHGNSDEFAVNLAAMEAL 117
gi 667632391  80 KAYALYKLRKYKKSLSVLKRMESsE--RVNVLLSQIYYFLRSYRKA---YNTL------SQCKYEKERDVNLCAMDSL 146
gi 380040564  96 KSYALYKTGQLEAAQKIFGEVTS-VsrGLRHVAAQVAYRAENFEEAgeiYKQLsvq-daALEDEENDLRINTLAVDAQ 171
gi 353230027  80 KAYVEYRLNRLTEAAKTLESAEA-SdsKVQELKAQVLYRKGDFAGA---YAYLrtvirnSQDDYSEERLANLTAVAAA 153
gi 685882205  51 RAYVFYKLKKYKKALRILRHIDT-E--GSKVLTSQCLYYLGYYNTA---YQIL------AEVKRDDDIVVNLQAMKGL 116
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