4H41


Conserved Protein Domain Family
DUF5109

?
pfam17134: DUF5109 
Domain of unknown function (DUF5109)
This is a family of Gram-positive Bacteroidetes and Firmicutes proteins. It lies just C-terminal to a putative glycosyl-hydrolase family, DUF4434, pfam14488. It is likely to be some form of binding or recognition domain.
Statistics
?
PSSM-Id: 319153
View PSSM: pfam17134
Aligned: 13 rows
Threshold Bit Score: 155.604
Threshold Setting Gi: 523975265
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4H41_A       220 QQHEKEWNEIFDGIH-EVVDACAFQD----GHIDYDELDAFFT-V-NKKLADKYGXQCWTNAESFDRDxPIRFLPIKFDK 292
gi 501116654 182 DQHCEDWNEILGVLA-GAVDIVAFQD----GQVDYDDLPDFLR-A-NRELITKHGMQAWSNVESFDRDvPFDFPPLDWRK 254
gi 643546217 183 DESFEHWERIFSETQ-GAYDICAFQD----GQIHYQELPRFIQ-G-IGELGKRHGVTIWSNLETFDRDmPIKFPPADWRY 255
gi 505359688 190 ESHEREWDAIFAGIQ-GAVDIVAFQD----GHVAYDELVDFLK-V-NKKLADRYGLECWTNSETFDRDmPIKFLPIKWEK 262
gi 505360584 190 ESHEAEWDAIFRGIQ-GAVDIVAFQD----GHVEYDELPEFLR-I-NKRLADRYGLECWTNTETFDRDmPIKFLPIKWEK 262
gi 523975265  59 EEYGQMWKNIFEKTRfRSGDIFSPQDcvgaGGLNLDNLEEWFSkL-KQAVNTKPGLKFWGNIETFDQRfWIT-AP--LER 134
gi 505039846 183 DEHIHEWESVFARLQ-GIVDIVAFQD----GNVAYRDLPEYLQ-A-NRKLASKYGLTSWSNVESFDRDvALKFPPLDFRK 255
gi 524740332 234 AEHEREWDEIFSGIH-DVIDACAFQD----GHIDYDELDAFFE-V-NKKLADRYGIKCWTNAETFDRDmPIKFLPIKFDK 306
gi 908658673 224 QEHERDWDEIFDGIS-GAVDICAFQD----GHIDYDELDAFFS-V-NKKLADKYQIACWTNAETFDRDmPIKFLPIKFDK 296
gi 495782436 190 LEHEKEWSEIFEGIQ-GAVDAVAFQD----GHIDYDQLDDFFA-V-NKKMADQFGLQCWTNAESFDRDmPIKFFPIKFEK 262
gi 503069756 190 KEHEAEWDEIFDGIK-NSIDIVAFQD----GHVDFNELEEYLT-I-NKSLADKYALQSWTNSESFDRDmPIKFLPIKWEK 262
gi 524134813 252 QQHEAEWNEILDNVK-GAVDILAFQD----GQVDYHELPGYLE-I-NKKLADKYGMHCWTNIESFDRDmPIRFFPIKWEK 324
gi 500757433 221 KEYASNWEYLFSKTNfKSGDIFCPQDsigsGRLKLDEVNSWYT-AlRKAVSKKPGMLFWANTETFDYV-NNSTVPLDRFL 298
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
4H41_A       293 LRXKLEaakRAGYDKAITFEFSHFXSPQSAYLQAGHLYDRY 333
gi 501116654 255 LWWKMQaaeQSGVEKLITFEFSHFMSPNSCWPAAKNLFNRY 295
gi 643546217 256 LRYKLEaa-aPVAEKVITFEFPHFMSPHSSYPSAHHLFERY 295
gi 505359688 263 LRLKMGlaaQAGYRNAITFEFSHFMSPQSAYLQAGHLYDRY 303
gi 505360584 263 LRLKLRmaeEAGIDQAITFEFSHFMSPQSAYLQAGHLYDRY 303
gi 523975265 135 VKKQLEvv-nGYVGNLICFAYSHYNSPFVVNKDYHKTYLQY 174
gi 505039846 256 LRYKIEqaeAAAVDKLITFEFSHFMSPNSIYPSAHHLHQQY 296
gi 524740332 307 LRMKLEaakRAGYDKAITFEFSHFMSPQSAYLQAGHLYDRY 347
gi 908658673 297 LRLKLEaaaRTGFDKAITFEFSHFMSPQSAYLQAGHLYKRY 337
gi 495782436 263 LRLKLEaarRAGYDKAITFEFSHFMSPQSAYLQAGHLYNRY 303
gi 503069756 263 LLLKLEaakRAGCEKAITFEFSHFMSPQSAYLQAGHLYNRY 303
gi 524134813 325 LLLKLEaarKAGMENAITFEFSHFMSPNSAYLQAPCLYERY 365
gi 500757433 299 KQLKLE---QPTVDNIICFSYNHYYSPNNISNGFNEAYSYY 336
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap