Conserved Protein Domain Family
PHA00147

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PHA00147: PHA00147 
upper collar protein
Statistics
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PSSM-Id: 133855
View PSSM: PHA00147
Aligned: 5 rows
Threshold Bit Score: 430.388
Threshold Setting Gi: 9629535
Created: 9-Dec-2010
Updated: 16-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629535     1 MSYKNyKRHLGKIELNKETVERnrlaFFEFYFNYFYNIVVNYFTWEGLPNDIDELFIEKKLIENGHVAFFHDDTFG-YIA 79
gi 22855158    1 MARKR-NSYKSINDIQRMRGNR----WYYHYYQYLCSLAYQLFEWERLPPSVDPSYLEKSIHQFGYVGFYKDPRIG-YIA 74
gi 12248117    1 -MLEDgFSYKTIGEIQRRRGNL----WFRTYQRYLFSLAYQMFEWQGLPKTVDPIFLEKQLHQRGFVAFYKDEMYG-YLG 74
gi 151266301   4 SDYVKnGIYNKIMLKPPSSSEArqaqLEHMYRRQLMGKCLSRFTWEGLPNGIDPRFIEATIFNNGYSVFYFDTMFEmFMA 83
gi 194186884   1 MARKRsNTYRSINEIQRQKRNR----WFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVIS-YIA 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629535    80 QGGTRGERLNHYDQPLTYQPVNASSMNYFKQMeiaytenDFrviEELHKDNPDkikrpcIVIPNNNFYEPYIGYLELFCE 159
gi 22855158   75 CQGALSGTVDHYNLPDRFHASSVGYQNTFKLY-------NY---SDMKEKNMG------VAIYNNDLKCSTLPALEMFAQ 138
gi 12248117   75 VQGTLSGQINLYNQPNFYTASAPTYQKSFPLY-------WYdmgEDLNEKGQG------IVIYNNLERMPTLDILNLYAM 141
gi 151266301  84 MPATISGPLDIQDNPTGYRVSRNGIYS-----------------REVSASDS-------VCIWGNQVREPEIDLVLSYAA 139
gi 194186884  76 CNGALSGQRDVYNQATVFRAASPVYQKEFKLY-------NY---RDMKEEDMG------VVIYNNDMAFPTTPTLELFAA 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629535   160 KLADIELTIQLNRNAQITPYFIFADNTNVLSMKNIFNKIANFEPVVYLNKQKDQDGqdsfkqlsdyIQVFRTDAPFLLDK 239
gi 22855158  139 DLAELKEIIAVNQNAQKTPVLIAANDNNQLSLKNIYNQYEGNAPVIFVHESLDLDN----------LKVFKTDAPYVVDK 208
gi 12248117  142 NLAELKETIYVNQNAQKTPVIIKAGDNDLFSMKQVYNKYEGNEPVIFAGKKFNTDD----------IEVLKTDAPYVADK 211
gi 151266301 140 RLAQIDRTIEIDLLNERNPMIVACSQDQRLTIQNLISRIYDGEPVVWGTENLSMENla------ntIGVFPLNQNAGAGA 213
gi 194186884 140 ELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDS----------IEVFKTDAPYVVDK 209
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629535   240 LHD-----EKLRVMNQLLTFIGINNNPSDKKERLVVSEAISNNGVISANIEVGWKSRRKFVELINKCYGLEISVK-PAE- 312
gi 22855158  209 LNA-----QKNAVWNEVMTYLGIKNANLEKKERMVTSEVDSNDEQIESSGNIYLKARQEACNKISELYGLNLKVKfRYD- 282
gi 12248117  212 LTM-----LFKDQWNEAMTFLGLSNANTDKKERLIQSEVESNNDQIQGSANIYLAPRQEACRLINEYYGLNVSVKlRKE- 285
gi 151266301 214 VSSikhmeSKSKIWGEALTMLGIMNVNSEKRERMVVEEASANSGQVLASRESFMKPRLLACEQINEKFGLNISCSwAVDd 293
gi 194186884 210 LNA-----QKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKfRYD- 283
                        330       340
                 ....*....|....*....|....*.
gi 9629535   313 -TIQQFNLDKVALDLAEKEGTIIDPE 337
gi 22855158  283 -IVEQMRLNAQGIENVSRGTLGGETN 307
gi 12248117  286 -LVGN-----GELHNAIEGNSGMGNT 305
gi 151266301 294 nAAPNLSDYLTELNTTTYGGENVGND 319
gi 194186884 284 -IVEQMRRELQQIENVSRGTSDGETN 308
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