1LMZ


Conserved Protein Domain Family
tag

?
TIGR00624: tag 
Click on image for an interactive view with Cn3D
DNA-3-methyladenine glycosylase I
All proteins in this family are alkylation DNA glycosylases that function in base excision repair This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Statistics
?
PSSM-Id: 129711
View PSSM: TIGR00624
Aligned: 6 rows
Threshold Bit Score: 300.648
Threshold Setting Gi: 15827521
Created: 7-Oct-2014
Updated: 23-Jan-2015
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1LMZ_A         2 ERCGWVSQDP-----LYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDV 76
gi 2330642     2 PRCFWCSDDP-----LYMAYHDQEWGTPLRDAQGLFELLLLEGFQAGLSWITVLRKRERYREVLYGFDVQRVAQMSDAEI 76
gi 112785      2 ERCGWVSQDP-----LYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDV 76
gi 621192972   7 VRCPWAEVRPgpdaqLYRDYHDNEWGRPLYGRVALFERMSLEAFQSGLSWLIILRKRENFRRAFSGFDIDKIARYTDTDV 86
gi 686003095   7 VRCPWAEVRPgpdaqLYRDYHDNEWGRPLYGRVALFERMSLEAFQSGLSWLIILRKRENFRRAFSGFDIDKIARYTDTDV 86
gi 499210568   7 VRCGWADVRSglhwqLYRNYHDQEWGSPVRCGVALFERMSLEAFQSGLSWLLILRKRENFRRAFSGFDIEEVARYTHADV 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1LMZ_A        77 ERLVQDAGIIRHRGKIQAIIGNARAYLQM-EQNgepfADFVWSFVNHQPQMTQATTL-SEIPTSTPASDALSKALKKRGF 154
gi 2330642    77 DELMLDPGIIRNRLKLKAARRNAQAWLAL-EDP----VTFLWSFVGDKPIINHFKDR-TEVPAITPEALAMSKGLKKAGF 150
gi 112785     77 ERLVQDAGIIRHRGKIQAIIGNARAYLQM-EQNgepfVDFVWSFVNHQPQVTQATTL-SEIPTSTSASDALSKALKKRGF 154
gi 621192972  87 RRLLADDGIVRNRAKIEATIANARAAADLgSSEd--lSELLWSFA---PPPRPRPVDgSEIPSVSTESKAMSRELKRRGF 161
gi 686003095  87 RRLLADDGIVRNRAKIEATIANARAAADLgSSEd--lSELLWSFA---PPPRPRPVDgSEIPSVSTESKAMSRELKRRGF 161
gi 499210568  87 QRLLFDDGIVRNRVKIEATIANARAAAELgSAAd--lSELLWSFA---PQPRSRPADgSEIPSTSAEAKAMARELKRRGF 161
                        170       180
                 ....*....|....*....|....*...
1LMZ_A       155 KFVGTTICYSFMQACGLVNDHVVGCCCY 182
gi 2330642   151 TFVGPTICYALMQASGMVMDHTQDCDRY 178
gi 112785    155 KFVGTTICYSFMQACGLVNDHVVGCCCY 182
gi 621192972 162 RFVGPTTAYALMQATGMVDDHIQACWVP 189
gi 686003095 162 RFVGPTTAYALMQATGMVDDHIQACWVP 189
gi 499210568 162 RFVGPTTAYALMQATGMVDDHICTCWVP 189
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap