Conserved Protein Domain Family
put_DNA_pack

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TIGR01560: put_DNA_pack 
uncharacterized phage protein (possible DNA packaging)
This model describes a small (~ 100 amino acids) protein found in phage and in putative prophage regions of a number of bacterial genomes. Members have been annotated in some cases as a possible DNA packaging protein, but the source of this annotation was not traced during construction of this model. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 130623
View PSSM: TIGR01560
Aligned: 7 rows
Threshold Bit Score: 81.2738
Threshold Setting Gi: 30263661
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5730301     7 ITDGLKRSLgYLDEDTslDEGLQKRMssaLIAAESYVQHAIGTDVKDfyiSEENKPLYTLVCNALAASYVQNPVSITSGA 86
gi 18144784    3 SLEEMKQYL-RIDYPD--DDELITSL---IQQAQIYIDSCCGINYKL---HTDKVNLANLLIKKMVSDQYDNRGLYLDSK 73
gi 19747936    7 LLDSVKLYC-KIDFDF--EDDIIKEM---IESAQEQICFAIEEGSTAg--TFKESAKFALAVKKQVKEEYDHRGLSADSF 78
gi 15024870    3 TLDQLKLSL-RIDTSD--DDTLLTLF---MQTASDYIKGSIGNGVTG---FYDSNPRFDTALILLTDHYYKTRSATDETD 73
gi 3341916     7 ELKLLKKHC-KIDHNS--EDDLLEIY---YSWAFHEIASAVTDEPSKyidWFKSHPLFARATYPLASYYFENRIAYLDRD 80
gi 446056258   7 TLEEVKLHC-RIDGDE--EDQLISGY---IAASLEACQIHIGRRFDD---GLEFTPAIKIGCMMFIAHLYENRQIVADNA 77
gi 446979567   4 MLDVVKKAV-RISHSAl-DDELEDLI---EASRYDLKLSGVSHLKAN----DDTDPLIKRAIITYVKANFISDAKEAERF 74
                         90       100
                 ....*....|....*....|
gi 5730301    87 VVNVDIVTNAIIGQLRGRYA 106
gi 18144784   74 KNGYDRMSSTILELLSNCEG 93
gi 19747936   79 RYPLANGVLNIIHQLRLRGD 98
gi 15024870   74 LKKVPFGVTTLILQLKGDYL 93
gi 3341916    81 LSLAPHMVLSTVHKLRGSFE 100
gi 446056258  78 KTRVPMTIGALWTAYRDVGV 97
gi 446979567  75 LA----SYNMLKNHLTLAGD 90
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