Conserved Protein Domain Family
YidE_YbjL_dupl

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TIGR01625: YidE_YbjL_dupl 
AspT/YidE/YbjL antiporter duplication domain
This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport. [Transport and binding proteins, Unknown substrate]
Statistics
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PSSM-Id: 130686
View PSSM: TIGR01625
Aligned: 9 rows
Threshold Bit Score: 117.818
Threshold Setting Gi: 334147473
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12544322   16 MTVGLLLGRIKIFG------FRLG-VAAVLFVGLALSTI--------EPDISVPSLIYVVGLSLFVYTIGLEAGPGFFTS 80
gi 15981975   15 AVLGLWIGNWKIYG------VGLG-IGGVLFGGIIVGHFaqt--yqiVLNGDMLHFIQEFGLILFVYTIGIQVGPGFFSS 85
gi 15979376   21 LALGLCLGKLRLGS------IQLGnAIGVLVVSLLLGQQ----------HFAINTEALNLGFMLFIFCVGVEAGPNFFSI 84
gi 15979376  390 FILGLMIGLITFQFsn--fsFGIGnAAGLLLAGIMLGFLranhptfgYIPQGALNMVKEFGLMVFMAGVGLSAGGGINSS 467
gi 12544322  369 LMIGVLVGMVEFPLpgg-ssLKLGnAGGPLVVALLLGMInrtgkfvwQIPYGANLALRQLGITLFLAAIGTSAGAGFRSA 447
gi 503582245 387 LVLGCVFGMIPFYLpgvsmpIKLGlAGGPIIIGILMGAFgprfhlttYVTNSANLLLRQFGIILYLGGLGLASGANFFDT 466
gi 503582245  28 CALGLQLGKLRIGt------ISLG-ITFVFFVGILASHFg------vTTDPVMLTFAQNFGLVIFVYALGLQVGPSFFPS 94
gi 25355613  386 IGLGVLLGSIPVFVpgfpaaLKLGlAGGPLIMALILGRIgsigklywFMPPSANLALRELGIVLFLSVVGLKSGGDFVNT 465
gi 499323257 364 lslglllgaiPIPLpgg-ttMSLGfGGGPIIAGLILGALkhtgpltwQMPFHANRTISTLGLALFLAGVGTSAGAGFRAA 442
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12544322   81 MKTTG--LRNNALTLGAIIATTALAWALITVLNIDAASGAGMLTGALTNTPAMAAVVDALPSliddtgqlhliAELPVVA 158
gi 15981975   86 LRVSG--LRLNCFAILMVVVGGLVTAIIHKLFAVPLPIILGVFSGAVTNTPALGAAQQILTDlgsp----pqlVSQMGMG 159
gi 15979376   85 FFRDG--KNYLMLALVMVGSAMILALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHtmangsslqqaQDNLSLG 162
gi 15979376  468 LGAVGgqMLISG-LIVSLVPVVICFVFGAYVLRMNRALLFGAIMGARTCAPAMDIISDTAR------------SNIPALG 534
gi 12544322  448 ISDPQslTIIGFGALLTLFISITVLFVGHKLMKIPFGETAGILAGTQTHPAVLSYVSDASR------------NELPAMG 515
gi 503582245 467 IIHGDglLWVGAGFLITMLPTLLVGWASIKLLRNRYDGTAGMICGSTANPMALDYVNSQLK------------GDGASVV 534
gi 503582245  95 LKKGG--IAQNLISLGLVLLTFLLCILLYYILGISMPNLMGIVAGATTNTPALGAAQTTLHQinpd---ataeMAEMALA 169
gi 25355613  466 LVNGExlSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPT-----------SGAAALS 534
gi 499323257 443 LTDSSslIYMAGGLVITLASALLCAVIGMWVLRLRWDEAMGVAAGTTTNPAIISYLNGQTGT------------DLANRG 510

                 ....*..
gi 12544322  159 YSLAYPL 165
gi 15981975  160 YAMAYPF 166
gi 15979376  163 YALTYLI 169
gi 15979376  535 YAGTYAI 541
gi 12544322  516 YTSVYPL 522
gi 503582245 535 YATVYPL 541
gi 503582245 170 CAVTYPL 176
gi 25355613  535 YATVYPL 541
gi 499323257 511 YATVYPT 517
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