Conserved Protein Domain Family
psiM2_ORF9

?
TIGR01630: psiM2_ORF9 
phage uncharacterized protein (putative large terminase), C-terminal domain
This model represents the C-terminal region of a set of phage proteins typically about 400-500 amino acids in length, although some members are considerably shorter. An article on Methanobacterium phage Psi-M2 ( calls the member from that phage, ORF9, a putative large terminase subunit, and ORF8 a candidate terminase small subunit. Most proteins in this family have an apparent P-loop nucleotide-binding sequence toward the N-terminus. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
?
PSSM-Id: 130691
View PSSM: TIGR01630
Aligned: 5 rows
Threshold Bit Score: 165.372
Threshold Setting Gi: 13476623
Created: 8-Oct-2014
Updated: 11-Oct-2014
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499196528  23 DYSVFQLWGLGE-DKRIYLLDMIRGKWEAPELKRRAIDFWNAHRaydhkVSAPI---RQMKIEDKSSGTGLIQDIARG-- 96
gi 499202122 312 DYLASFIYAETK-DKEAYILDAIYTKEPMEVTEPLLAQKLNEHK-----VNLAR---IESNNGGRGFGRSVQRILKEKyg 382
gi 499289622 354 DPSAIIIGGYQRvTGKLYVVEAQIKKRLPDLIIEDVIRLHRQYR-----CKLWF---VETVQFQEFLKDELVKRSAAR-- 423
gi 665108199 324 DFVAGHVWNRKK--ADFFFIDRIHDRMGLPETLNAVRRLTIKHP-----L---A---IAKYIEEKANGPAVMQTLK---- 386
gi 499217740 316 DGTAGTKIGKLP-DGRYIVGHHVKDFLSPAGVERLIKNTAEADG-----RNAKIslpQDPGQAGKSQVANLVKLL----- 384
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499196528  97 GsgqGRIPVTGIARVTDKLTRVMDVVSYIEAGWVVIPAQ--AGWVKDFVAECEAFTADgTHAHDDQIDPMVDAINDLLA 173
gi 499202122 383 T---NRTSFDFFYQSKNKEARILSNATWVMEHIYFPANW--RHRWPELYQALTTYQREgKNAYDDAPDALTGVAESVQD 456
gi 499289622 424 G---IPVPARAVKPVSDKLLRIETLQPHMANGLILLNES-----QQTLIQQFRHFP---KADHDDGPDAVHMLWSGAVA 491
gi 665108199 387 G---EITGMIGVEPEGGKETRAYAVTPLFESGNVYFPHPlyAPWISDVIEEMLAFPNG-E--HDDDVDAMTQALVKLMI 459
gi 499217740 385 ----IGFDARATPESGDKVTRFSPFSAQAEAGNVMVLR---APWNEAWFSALEGFP---EAAHDDDADSTSRAFNALID 453
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap