Conserved Protein Domain Family
nuoE_fam

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TIGR01958: nuoE_fam 
NADH-quinone oxidoreductase, E subunit
This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria. [Energy metabolism, Electron transport]
Statistics
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PSSM-Id: 131013
View PSSM: TIGR01958
Aligned: 9 rows
Threshold Bit Score: 219.554
Threshold Setting Gi: 15806513
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647652    15 KLQEHINYFPK----KRQAILLCLHEIQNY-YG-YIPPESLKPLADMLELPLNHVEGVVAFYDMFDREDKA-KYRIRVCV 87
gi 11133961   17 AIENQKKYYED----FRAISIEALKIVQKK-RG-WVSDQAIYAIAEILHINPSDVEGVATFYSQIFRKPVG-RNIIRYCD 89
gi 8473988    25 WAEATIKKYPEg--rEQSAVIPLLMRAQEQ-DG-WVTRAAIESVADMLGMAYIRVLEVATFYTQFQLQPVGtRAHVQVCG 100
gi 6647681    19 LAETIIKKYPPe--gKRSAILPLLDLAQRQ-NGgWLHVSAIEYVANMLEMPYMRAYEVATFYTMFNLNPIG-KYHIQVCT 94
gi 17380452    6 EIEAAAARYPD----RRSAIMPALMIAQKE-HG-HLPGPVLEEVAQILGVERVWVYELATFYTLFHTEPIG-RFHLQLCD 78
gi 499311216   9 EIDRAVAKYPAd--qKQSAVMAALAVAQSE-KG-WVSPEVMQFVAEYLEMPPVWVEEVATFYNMYDTKPVG-RFKLTVCT 83
gi 489786059   9 QIDIELAKYPAd--qRRSAIMGALRIAQTE-KG-WLAPETIAFVADYIGITPAQAYEVATFYNMYDLEPVG-KYKLTVCT 83
gi 490186694  26 HIDHWLAKFPAd--qKRSALLQGLYAAQEQnQG-WLTDELIAAVAKYLDIPSVWAYEVATFYSMFETRKVG-RHNVAFCT 101
gi 499190600  10 LVAEIFSRYPDtpqgRRSALMPLLREVQDA-EG-FVAAPRLAEIAELCGTTATEVRSVMSFYSTYHTVPTG-RYHLQVCS 86
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6647652    88 SIVCHLMGTNKLLKALENILGIKPGEVTPDGKFKIV-PVQCLGACSEAPVFMV-N-D-D-EYKFESEVQLNEILSRYT 160
gi 11133961   90 SVVCFLTGYKRIQIALENYLKIKIGETTKDDRFTLL-PVCCLGNCDKGPTIMI-N-E-D-TYSVLTPESIPSLLESYK 162
gi 8473988   101 TTPCMLRGAEDLIKICKKKIASEPFTLNEGGTLSWE-EVECQGACVNAPMVMI-F-K-D-TFEDLTPERLEEIIDRFE 173
gi 6647681    95 TTPCWLRGSDNIMKICEKKLAIKHKETTKDQKFTLS-EIECLGACVNAPVVQI-N-D-D-YYEDLNEAKMEKLIEQYL 167
gi 17380452   79 NVSCMLCGSEALLTHLETTLGIRKGETTPDGAFTLS-TVECLGACEMAPVMQV-GdD---YHGNLDAARLDALLESFR 151
gi 499311216  84 NLPCALSGGERAADYLKQKLGIGFNETTADGTFTLK-EGECMGACGDAPVMIVnN-T-H-MCSFMSNEKLDALIADLK 157
gi 489786059  84 NLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLV-EGECMGACGDAPVMLV-N-N-HsMCSFMTEEAIEKKLAELE 157
gi 490186694 102 NVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLKcEEECLAACAGAPMMVI-N-G-H-YHERLTKEKVDQLLDGLE 175
gi 499190600  87 TLMCALAGSDALWDELVTRLDVQPGEVTPDGRFSVQ-KVECLGSCGTAPVLQL-N-DeG-FYERVGParlaellaalq 160
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